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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0655 and Psest_0656 are separated by 11 nucleotides
Psest_0656 and Psest_0657 overlap by 22 nucleotides
Psest_0657 and Psest_0658 overlap by 11 nucleotides
Psest_0658 and Psest_0659 are separated by 1 nucleotides
Psest_0655: Psest_0655 - Chemotaxis signal transduction protein, at 711,989 to 712,486
_0655
Psest_0656: Psest_0656 - Methyl-accepting chemotaxis protein, at 712,498 to 714,144
_0656
Psest_0657: Psest_0657 - Chemotaxis protein histidine kinase and related kinases, at 714,123 to 716,369
_0657
Psest_0658: Psest_0658 - Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor), at 716,359 to 716,700
_0658
Psest_0659: Psest_0659 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 716,702 to 717,067
_0659
Group
Condition
Psest
_0655
Psest
_0656
Psest
_0657
Psest
_0658
Psest
_0659
RCH2 grown on a colony of Serratia
-1.0
-1.6
-0.2
-0.6
N.D.
stress
Nalidixic 0.00390625 mg/ml
-2.8
-0.6
-0.0
+0.2
N.D.
RCH2 grown on a colony of N2F3
-1.5
-0.2
-0.6
-0.3
N.D.
stress
benzoic 0.4 mg/ml
-1.9
-0.3
+0.1
-0.3
N.D.
stress
Def Cephalothin 0.08 mg/ml
-1.4
-0.4
-0.1
-0.4
N.D.
stress
L-Lysine 200 mM
-1.2
-0.6
+0.0
-0.5
N.D.
stress
5-Hydroxymethylfurfural 5 mM
-1.2
-0.5
-0.0
-0.4
N.D.
stress
5-Hydroxymethylfurfural 5 mM
-1.2
-0.5
-0.0
-0.3
N.D.
lb
LB
-1.1
-0.9
-0.1
-0.0
N.D.
stress
2-Furfuraldehyde 0.05 vol%
-1.2
-0.2
-0.2
-0.5
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-1.4
-0.4
-0.1
-0.0
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.9
-0.5
-0.4
-0.0
N.D.
vitamin
With vitamins t2
-1.6
+0.2
-0.2
-0.2
N.D.
vitamin
With vitamins t1
-1.4
+0.2
-0.2
-0.2
N.D.
stress
Chlorite 0.06 mM
-1.1
-0.4
-0.2
+0.2
N.D.
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-1.3
-0.0
+0.3
-0.3
N.D.
nitrogen source
L-Glutamic (N)
-0.9
-0.4
+0.3
-0.3
N.D.
vitamin
No vitamins t2
-1.5
+0.2
-0.1
+0.2
N.D.
stress
Chlorate 75 mM
-2.6
+0.8
-0.0
+0.6
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-1.3
-0.1
+0.1
+0.4
N.D.
stress
Cisplatin 0.003 mg/ml
-1.3
+0.2
-0.0
+0.4
N.D.
nutrient
Min media with glucose
-0.8
+0.7
+0.1
-0.3
N.D.
RCH2 grown on a colony of ecoli
-1.1
+0.4
+0.7
-0.0
N.D.
stress
Def Chlorate 20 mM
+1.0
-0.3
+0.1
-0.5
N.D.
stress
Thallium(I) acetate 0.09 mg/ml
+1.2
-0.0
-0.2
-0.6
N.D.
RCH2 grown on a colony of N2A2
+1.3
-1.1
+0.5
-0.1
N.D.
stress
Def Carbenicillin 0.02 mg/ml
+0.8
-0.6
+0.3
+0.2
N.D.
carbon source
L-tyrosine (C)
-0.1
+0.6
+0.6
+0.7
N.D.
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
+0.4
+0.6
+0.5
+0.4
N.D.
stress
Gentamicin 0.0016 mg/ml
+1.4
+0.5
-0.0
+0.3
N.D.
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