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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0635 and Psest_0636 are separated by 2 nucleotides
Psest_0636 and Psest_0637 are separated by 83 nucleotides
Psest_0637 and Psest_0638 are separated by 10 nucleotides
Psest_0638 and Psest_0639 are separated by 76 nucleotides
Psest_0635: Psest_0635 - ATP-dependent helicase HrpB, at 689,487 to 691,637
_0635
Psest_0636: Psest_0636 - Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein, at 691,640 to 692,455
_0636
Psest_0637: Psest_0637 - Short-chain dehydrogenases of various substrate specificities, at 692,539 to 693,369
_0637
Psest_0638: Psest_0638 - Predicted lactoylglutathione lyase, at 693,380 to 693,808
_0638
Psest_0639: Psest_0639 - Uncharacterised protein family (UPF0259)., at 693,885 to 694,565
_0639
Group
Condition
Psest
_0635
Psest
_0636
Psest
_0637
Psest
_0638
Psest
_0639
stress
Furfuryl Alcohol 0.05 vol%
+0.2
+0.2
-0.8
-1.3
-0.4
nitrogen source
L-Alanine (N)
-0.4
-0.0
-0.5
-0.4
-0.8
stress
Def Phosphomycin 0.125 mg/ml
-0.5
-0.3
-0.2
-0.5
-0.2
RCH2 grown on a colony of N2C3
-0.6
-0.2
-0.5
+0.3
-0.4
nitrogen source
L-Arginine (N)
+0.2
-0.5
-0.3
-0.3
-0.3
RCH2 grown on a colony of Serratia
+0.3
-0.5
-0.4
-0.2
-0.4
nitrogen source
nitrite (N)
-0.3
-0.3
-0.1
+0.4
-0.6
RCH2 grown on a colony of Serratia
-0.4
-0.3
-0.6
+0.1
+0.5
nitrogen source
L-Isoleucine (N)
+0.1
+0.1
-0.6
+0.3
-0.5
stress
Paraquat dichloride 0.015 mg/ml
+0.2
+0.0
+0.5
-0.2
-0.8
stress
Def Cephalothin 0.04 mg/ml
+0.5
-0.1
-0.5
+0.1
+0.4
lb
LB
-0.1
-0.0
+0.7
+0.3
-0.6
stress
Benzethonium chloride 0.01 mM
+0.3
+0.5
-0.5
+0.5
+0.1
stress
Def Benzethonium chloride 0.008 mM
-0.2
+0.3
+0.1
+0.9
-0.3
carbon source
L-Lactate (C)
-0.2
+0.4
+0.4
+0.6
-0.1
stress
Def Carbenicillin 0.008 mg/ml
+0.2
+0.2
+0.2
+1.0
-0.4
carbon source
butyrate (C)
-0.2
+1.2
-0.0
+0.5
-0.2
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.2
+0.4
+0.3
+0.7
+0.0
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.3
+0.5
-0.0
+0.3
+0.5
anaerobic
nitrate reduction - anaerobic
+0.1
+0.3
+0.2
+0.7
+0.3
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.4
+0.4
+0.2
+0.7
-0.0
stress
Def Nalidixic 0.001 mg/ml
+0.3
+0.3
+0.4
+0.6
+0.2
stress
A22 0.005 mg/ml
+0.0
+0.1
+0.3
+1.1
+0.4
nitrogen source
L-Isoleucine (N)
+0.2
+0.5
+0.4
+0.4
+0.4
stress
A22 0.002 mg/ml
+0.3
+0.0
+0.6
+0.6
+0.4
stress
nitrate 250 mM
+0.4
+0.1
+1.0
+0.9
-0.4
stress
Benzalkonium Chloride 0.002 mg/ml
+0.3
+0.4
+0.7
+0.7
+0.3
stress
Cephalothin 0.04 mg/ml
+0.7
+0.2
+0.4
+1.3
-0.0
stress
Chlorate 75 mM
+1.3
+0.2
+0.8
+0.3
+0.1
stress
Fusidic 0.016 mg/ml
+0.2
+0.2
+0.9
+1.1
+0.6
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