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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0608 and Psest_0609 overlap by 4 nucleotides
Psest_0609 and Psest_0610 overlap by 90 nucleotides
Psest_0610 and Psest_0611 overlap by 4 nucleotides
Psest_0611 and Psest_0612 are separated by 320 nucleotides
Psest_0608: Psest_0608 - Cd(II)/Pb(II)-responsive transcriptional regulator, at 659,041 to 659,445
_0608
Psest_0609: Psest_0609 - hypothetical protein, at 659,442 to 659,657
_0609
Psest_0610: Psest_0610 - heavy metal sensor kinase, at 659,568 to 660,941
_0610
Psest_0611: Psest_0611 - heavy metal response regulator, at 660,938 to 661,612
_0611
Psest_0612: Psest_0612 - outer membrane porin, OprD family., at 661,933 to 663,252
_0612
Group
Condition
Psest
_0608
Psest
_0609
Psest
_0610
Psest
_0611
Psest
_0612
stress
Anaerobic 500 uM Zinc chloride sample2
-0.3
-1.0
-2.3
-2.2
-0.0
stress
Anaerobic 500 uM Zinc chloride sample1
-0.4
-0.9
-2.1
-2.1
-0.0
stress
Anaerobic 500 uM Zinc chloride sample3
-0.3
+0.0
-2.4
-2.4
-0.1
stress
Chlorate 75 mM
-1.3
-1.4
-0.5
-0.2
-0.5
stress
Lactate-nitrate; anaerobic; copper stress sample3
-0.8
-1.6
-0.4
-0.4
-0.4
RCH2 grown on a colony of N2F3
-0.3
-2.6
-0.1
-0.5
+0.1
stress
Cephalothin 0.04 mg/ml
-0.9
-0.3
-0.8
-0.5
-0.5
metal limitation
Lactate-nitrite with YE; anaerobic; sample3
-0.7
-1.3
-0.4
-0.4
-0.2
stress
nitrate 250 mM
-0.6
-1.2
-0.9
-0.5
+0.3
stress
Lactate-nitrate; anaerobic sample2
-0.9
-1.0
-0.4
-0.4
-0.2
metal limitation
Lactate-nitrite; anaerobic; sample1
-0.8
-0.8
-0.5
-0.4
-0.4
RCH2 grown on a colony of Serratia
-0.6
-2.0
-0.2
-0.3
+0.3
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
-0.7
-1.2
-0.2
-0.0
-0.4
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-0.6
-0.8
-0.5
-0.2
-0.5
metal limitation
Lactate; aerobic; sample3
-0.6
-1.3
-0.2
-0.3
-0.2
stress
nitrite 2.5 mM
-0.1
-2.9
+0.2
+0.4
-0.1
stress
Lactate-nitrate; anaerobic; nickel stress sample3
-0.9
-1.2
-0.1
+0.1
-0.5
metal limitation
Lactate-nitrite; anaerobic; sample3
-0.9
-0.1
-0.5
-0.5
-0.3
stress
Def Carbenicillin 0.008 mg/ml
-1.1
+0.7
-1.0
-0.5
-0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.6
-1.6
+0.0
+0.3
-0.2
RCH2 grown on a colony of N2C3
+0.4
-2.8
+0.3
-0.3
+0.4
stress
Gentamicin 0.0016 mg/ml
-0.7
+0.3
-0.8
-0.4
-0.3
stress
Zinc 0.12 mM
+0.2
-1.6
-0.2
-0.2
+0.2
stress
Neomycin 0.004 mg/ml
-0.2
-1.6
-0.1
-0.2
+0.5
stress
Def Carbenicillin 0.02 mg/ml
-0.3
+0.8
-0.7
-0.7
-0.6
carbon source
propionate (C)
+0.5
-1.9
+0.1
+0.0
+0.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.7
+0.9
-0.4
-0.2
+0.3
RCH2 grown on a colony of ecoli
-0.4
+1.3
-0.1
-0.4
+0.2
RCH2 grown on a colony of N2F3
-0.2
+2.1
+0.0
-0.1
-0.1
stress
2-Furfuraldehyde 0.05 vol%
+0.2
+1.7
+0.1
-0.3
+0.2
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