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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0056 and Psest_0057 are separated by 140 nucleotides
Psest_0057 and Psest_0058 are separated by 5 nucleotides
Psest_0058 and Psest_0059 are separated by 389 nucleotides
Psest_0059 and Psest_0060 are separated by 2 nucleotides
Psest_0056: Psest_0056 - Glutathione S-transferase, at 57,791 to 58,633
_0056
Psest_0057: Psest_0057 - Predicted transcriptional regulators, at 58,774 to 59,067
_0057
Psest_0058: Psest_0058 - HipA-like C-terminal domain./HipA-like N-terminal domain., at 59,073 to 60,392
_0058
Psest_0059: Psest_0059 - hypothetical protein, at 60,782 to 61,153
_0059
Psest_0060: Psest_0060 - Predicted Fe-S protein, at 61,156 to 61,338
_0060
Group
Condition
Psest
_0056
Psest
_0057
Psest
_0058
Psest
_0059
Psest
_0060
stress
Choline Lysine 20 mM
-0.0
-5.9
-0.1
N.D.
-0.3
stress
Choline Lysine 20 mM
+0.1
-4.1
-0.2
N.D.
-0.4
stress
Chlorate 75 mM
+0.0
-0.6
-0.2
N.D.
-2.9
nitrogen source
L-Isoleucine (N)
-0.1
-0.7
-0.5
N.D.
-1.2
stress
Def Chlorate 20 mM
-0.2
-0.5
+0.1
N.D.
-2.0
temperature
LB 30C timecourse2 timepoint 2
+0.1
-0.7
-0.1
N.D.
-1.7
carbon source
L-tyrosine (C)
-0.1
+0.1
-0.1
N.D.
-2.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.6
-0.2
-0.3
N.D.
-1.1
carbon source
butyrate (C)
+0.4
-1.9
+0.1
N.D.
-0.9
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
-1.3
-0.1
N.D.
-0.9
stress
acetate 80 mM
+0.2
-0.2
-0.1
N.D.
-1.6
stress
Cobalt chloride 0.07 mM
+0.1
-0.1
+0.0
N.D.
-1.6
stress
L-Lysine 200 mM
-0.1
+0.2
+0.1
N.D.
-1.8
RCH2 grown on a colony of ecoli
+0.1
-0.6
+0.4
N.D.
-1.4
stress
Benzethonium chloride 0.0125 mM
+0.2
-0.4
-0.1
N.D.
-1.3
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.3
-1.0
-0.1
N.D.
-0.7
stress
Furfuryl Alcohol 0.3 vol%
-0.7
+0.1
+0.2
N.D.
-1.0
stress
A22 0.005 mg/ml
-0.2
-1.3
-0.4
N.D.
+0.4
stress
Fusidic 0.016 mg/ml
+0.4
-1.2
-0.4
N.D.
-0.3
stress
Def Chlorate 40 mM
-0.0
-0.3
+0.4
N.D.
-1.4
stress
Gentamicin 0.0016 mg/ml
+0.7
-1.2
-0.2
N.D.
-0.5
stress
Lactate-nitrate; anaerobic; cadmium stress sample3
+0.1
+0.3
+0.1
N.D.
-1.5
RCH2 grown on a colony of Serratia
-0.2
-0.9
-0.3
N.D.
+1.1
stress
Paraquat dichloride 0.015 mg/ml
+0.1
+1.2
-0.2
N.D.
-1.3
stress
Def Carbenicillin 0.02 mg/ml
+0.7
+0.7
+0.6
N.D.
-1.6
stress
Cephalothin 0.04 mg/ml
+0.9
-0.9
-0.1
N.D.
+0.8
stress
Furfuryl Alcohol 0.05 vol%
-0.5
+1.4
+0.3
N.D.
-0.4
stress
Def Carbenicillin 0.008 mg/ml
+1.1
-0.6
-0.1
N.D.
+0.5
stress
Carbenicillin 0.008 mg/ml
-0.1
-0.3
+0.1
N.D.
+1.5
stress
Benzethonium chloride 0.01 mM
+0.1
-0.7
+0.3
N.D.
+1.7
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