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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0585 and Psest_0586 are separated by 9 nucleotides
Psest_0586 and Psest_0587 are separated by 478 nucleotides
Psest_0587 and Psest_0588 are separated by 378 nucleotides
Psest_0588 and Psest_0589 overlap by 26 nucleotides
Psest_0585: Psest_0585 - Uncharacterized protein involved in copper resistance, at 635,634 to 636,632
_0585
Psest_0586: Psest_0586 - hypothetical protein, at 636,642 to 637,451
_0586
Psest_0587: Psest_0587 - Domain of Unknown Function (DUF326)., at 637,930 to 638,259
_0587
Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363
_0588
Psest_0589: Psest_0589 - Uncharacterized protein conserved in bacteria, at 639,338 to 639,793
_0589
Group
Condition
Psest
_0585
Psest
_0586
Psest
_0587
Psest
_0588
Psest
_0589
stress
Def Carbenicillin 0.008 mg/ml
-0.0
+0.0
-0.9
-0.9
-1.7
stress
nitrate 250 mM
+0.4
-0.4
-0.9
-0.5
-1.4
temperature
LB 30C timecourse1 timepoint 3
+0.0
-0.1
-0.9
-0.4
-0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
+0.1
-1.2
-0.5
-0.3
stress
Gentamicin 0.0016 mg/ml
-0.0
+0.2
-0.5
-0.7
-0.9
carbon source
RCH2 defined media
-0.0
+0.2
-0.4
-0.6
-1.0
RCH2 grown on a colony of ecoli
+0.0
-0.1
-1.6
+0.0
-0.0
stress
Def Benzethonium chloride 0.008 mM
+0.1
+0.2
-0.5
-0.6
-1.0
carbon source
L-Lactate (C)
-0.3
+0.1
-0.3
-0.5
-0.7
carbon source
L-Proline (C)
-0.2
-0.1
-0.5
-0.4
-0.4
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.2
-0.7
+0.1
-0.5
-0.3
stress
Fusidic 0.016 mg/ml
-0.1
+0.6
-0.4
-0.4
-1.2
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.1
+0.3
-0.6
-0.7
-0.6
RCH2 grown on a colony of N2F3
-0.3
-0.3
-0.3
+0.2
-0.8
stress
Phosphomycin 0.012 mg/ml
-0.2
+0.1
-0.9
-0.1
-0.5
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.0
+0.1
-0.3
-0.4
-0.8
nitrogen source
Putrescine (N)
+0.2
-0.1
-0.8
-0.5
-0.0
stress
Cephalothin 0.04 mg/ml
+0.3
+0.2
-0.3
-0.6
-0.7
stress
acetate 80 mM
+0.1
+0.1
-1.1
-0.2
+0.2
RCH2 grown on a colony of 8R2A
+0.1
+0.3
-1.3
+0.1
-0.0
lb
LB
-0.2
+0.2
-0.9
+0.3
+0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.3
-0.1
-1.0
+0.0
+0.2
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.4
+0.5
+0.2
-0.4
-0.3
stress
Nalidixic 0.00390625 mg/ml
-0.4
+0.0
+0.7
-0.4
-0.1
stress
Spectinomycin 0.00625 mg/ml
+0.4
+0.3
-0.7
+0.3
-0.1
RCH2 grown on a colony of Serratia
-0.0
+0.0
-0.7
+1.1
-0.1
RCH2 grown on a colony of N2F3
-0.2
+0.2
+1.2
+0.0
-0.4
stress
Benzethonium chloride 0.0125 mM
+0.2
-0.2
+0.6
+0.4
-0.2
stress
Spectinomycin 0.00625 mg/ml
+0.3
+0.1
-0.4
+0.5
+0.4
stress
nitrate 200 mM
+0.2
-0.4
-0.0
+0.5
+0.7
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