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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0054 and Psest_0055 are separated by 211 nucleotides
Psest_0055 and Psest_0056 are separated by 328 nucleotides
Psest_0056 and Psest_0057 are separated by 140 nucleotides
Psest_0057 and Psest_0058 are separated by 5 nucleotides
Psest_0054: Psest_0054 - hypothetical protein, at 56,037 to 56,429
_0054
Psest_0055: Psest_0055 - hypothetical protein, at 56,641 to 57,462
_0055
Psest_0056: Psest_0056 - Glutathione S-transferase, at 57,791 to 58,633
_0056
Psest_0057: Psest_0057 - Predicted transcriptional regulators, at 58,774 to 59,067
_0057
Psest_0058: Psest_0058 - HipA-like C-terminal domain./HipA-like N-terminal domain., at 59,073 to 60,392
_0058
Group
Condition
Psest
_0054
Psest
_0055
Psest
_0056
Psest
_0057
Psest
_0058
stress
Choline Lysine 20 mM
-0.2
-0.0
-0.0
-5.9
-0.1
stress
Choline Lysine 20 mM
-0.2
-0.2
+0.1
-4.1
-0.2
stress
A22 0.005 mg/ml
-1.3
-0.6
-0.2
-1.3
-0.4
nitrogen source
L-Isoleucine (N)
-1.6
-0.3
-0.1
-0.7
-0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.7
-0.8
-0.6
-0.2
-0.3
lb
LB
-0.4
-0.6
-0.3
-0.7
-0.2
stress
Def Cephalothin 0.08 mg/ml
-0.6
-1.0
-0.1
+0.1
-0.3
lb
LB
-1.1
+0.1
-0.0
-0.3
-0.4
RCH2 grown on a colony of ecoli
-0.6
+0.1
+0.1
-1.3
+0.1
carbon source
butyrate (C)
-0.1
+0.3
+0.4
-1.9
+0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.2
+0.2
+0.3
-1.3
-0.1
stress
Fusidic 0.016 mg/ml
-0.1
+0.4
+0.4
-1.2
-0.4
nitrogen source
nitrite (N)
+0.3
-0.2
+0.4
-1.2
-0.0
temperature
LB 30C timecourse1 timepoint 1
-1.0
+0.1
+0.3
+0.4
-0.1
stress
Gentamicin 0.0016 mg/ml
+0.1
+0.4
+0.7
-1.2
-0.2
stress
Cephalothin 0.04 mg/ml
-0.4
+0.5
+0.9
-0.9
-0.1
RCH2 grown on a colony of 8R2A
-0.4
+0.6
+0.2
-0.5
+0.3
RCH2 grown on a colony of Serratia
-0.6
+0.4
-0.2
+0.6
-0.0
nitrogen source
Parabanic Acid (N)
+0.3
+0.4
+0.5
-0.9
-0.1
temperature
LB 26C sample1
+1.0
-0.4
+0.1
-0.2
-0.2
lb
LB
+0.9
-0.5
-0.2
+0.3
-0.1
lb
LB
+0.2
+0.7
+0.3
-0.6
+0.2
nitrogen source
nitrite (N)
+0.3
+0.6
+0.7
-0.5
+0.0
stress
Paraquat dichloride 0.015 mg/ml
+0.5
-0.3
+0.1
+1.2
-0.2
stress
Benzalkonium Chloride 0.002 mg/ml
+0.8
+0.4
+0.4
+0.2
+0.1
stress
Furfuryl Alcohol 0.05 vol%
+0.3
+0.2
-0.5
+1.4
+0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.8
+0.8
+1.1
-0.6
-0.1
stress
Nickel (II) chloride 0.8 mM
+0.8
+0.7
+0.2
+0.0
+0.3
stress
perchlorate 25 mM
+0.7
+0.7
+0.3
+0.2
+0.2
stress
Def Carbenicillin 0.02 mg/ml
+1.3
+0.8
+0.7
+0.7
+0.6
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