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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0555 and Psest_0556 are separated by 329 nucleotides
Psest_0556 and Psest_0557 are separated by 368 nucleotides
Psest_0557 and Psest_0558 are separated by 116 nucleotides
Psest_0558 and Psest_0559 overlap by 4 nucleotides
Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666
_0555
Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724
_0556
Psest_0557: Psest_0557 - Urease (EC 3.5.1.5)
(from data)
, at 611,093 to 612,793
_0557
Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215
_0558
Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775
_0559
Group
Condition
Psest
_0555
Psest
_0556
Psest
_0557
Psest
_0558
Psest
_0559
nitrogen source
Parabanic Acid (N)
+0.0
+0.2
-3.8
-3.6
-1.3
nitrogen source
Parabanic Acid (N)
+0.1
+0.5
-3.5
-3.6
-1.4
nitrogen source
Parabanic Acid (N)
+0.2
+0.2
-3.1
-4.3
-0.9
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.1
-0.1
-0.7
-4.5
+0.1
RCH2 grown on a colony of N2F3
+0.1
+0.2
-0.1
-4.6
-0.1
nitrogen source
Adenine (N)
+0.0
+0.1
-1.6
-2.6
-0.4
nitrogen source
Adenine (N)
-0.0
+0.3
-1.6
-2.3
-0.5
carbon source
L-Alanine (C)
-0.2
+0.2
-0.0
-4.1
-0.1
stress
Zinc 0.12 mM
+0.2
+0.1
+0.2
-4.6
+0.1
carbon source
Glycolic Acid (C)
-0.0
-0.3
+0.2
-3.7
-0.1
nitrogen source
Urea (N)
-0.0
-0.2
-1.1
-1.7
-0.5
RCH2 grown on a colony of N2F3
+0.2
-0.2
+0.1
-3.2
-0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.1
-0.1
-2.5
-0.7
stress
Thallium(I) acetate 0.08 mg/ml
+0.3
+0.2
-0.4
-3.2
-0.0
stress
nitrate 200 mM
+0.0
-0.4
-0.2
-2.2
-0.1
temperature
LB 26C sample1
+0.1
-0.0
+0.0
-2.7
-0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
-0.6
-0.6
-1.6
+0.1
RCH2 grown on a colony of Serratia
+0.2
+0.6
-0.4
-3.2
+0.3
stress
Cobalt chloride 0.07 mM
-0.1
-0.1
+0.2
-2.3
-0.2
stress
acetate 80 mM
-0.4
+0.4
+0.0
-2.3
-0.2
stress
Lomefloxacin 0.0001 mM
+0.2
-0.1
-0.2
-2.4
+0.2
stress
Cobalt chloride 0.06 mM
-0.1
-0.4
+0.3
-2.1
+0.2
lb
LB
+0.3
-0.0
-0.1
-2.3
+0.0
stress
Furfuryl Alcohol 0.2 vol%
+0.1
+0.1
+0.5
-2.0
-0.2
stress
Choline chloride 90 mM
-0.0
-0.2
+0.5
-1.8
+0.3
stress
Spectinomycin 0.00625 mg/ml
-0.2
-0.1
-0.6
+1.7
-0.1
nitrogen source
L-Glutamic (N)
+0.1
+0.1
-0.0
+2.0
-0.5
stress
5-Hydroxymethylfurfural 5 mM
-0.2
+0.3
+0.5
+1.8
+0.2
carbon source
L-tyrosine (C)
-0.3
+0.0
+0.6
+2.1
+0.2
stress
Lactate-nitrate; anaerobic; nickel stress sample2
+0.4
-0.1
+0.1
+2.2
+0.1
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