Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_0555 and Psest_0556 are separated by 329 nucleotidesPsest_0556 and Psest_0557 are separated by 368 nucleotidesPsest_0557 and Psest_0558 are separated by 116 nucleotidesPsest_0558 and Psest_0559 overlap by 4 nucleotides Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666 _0555 Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724 _0556 Psest_0557: Psest_0557 - Urease (EC 3.5.1.5) (from data), at 611,093 to 612,793 _0557 Psest_0558: Psest_0558 - urease, beta subunit, at 612,910 to 613,215 _0558 Psest_0559: Psest_0559 - Sortase and related acyltransferases, at 613,212 to 613,775 _0559
Group Condition Psest_0555 Psest_0556 Psest_0557 Psest_0558 Psest_0559
nitrogen source Parabanic Acid (N) +0.0 +0.2 -3.8 -3.6 -1.3
nitrogen source Parabanic Acid (N) +0.1 +0.5 -3.5 -3.6 -1.4
nitrogen source Parabanic Acid (N) +0.2 +0.2 -3.1 -4.3 -0.9
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 +0.1 -0.1 -0.7 -4.5 +0.1
RCH2 grown on a colony of N2F3 +0.1 +0.2 -0.1 -4.6 -0.1
nitrogen source Adenine (N) +0.0 +0.1 -1.6 -2.6 -0.4
nitrogen source Adenine (N) -0.0 +0.3 -1.6 -2.3 -0.5
carbon source L-Alanine (C) -0.2 +0.2 -0.0 -4.1 -0.1
stress Zinc 0.12 mM +0.2 +0.1 +0.2 -4.6 +0.1
carbon source Glycolic Acid (C) -0.0 -0.3 +0.2 -3.7 -0.1
nitrogen source Urea (N) -0.0 -0.2 -1.1 -1.7 -0.5
RCH2 grown on a colony of N2F3 +0.2 -0.2 +0.1 -3.2 -0.2
stress Polymyxin B sulfate 0.0001 mg/ml -0.1 +0.1 -0.1 -2.5 -0.7
stress Thallium(I) acetate 0.08 mg/ml +0.3 +0.2 -0.4 -3.2 -0.0
stress nitrate 200 mM +0.0 -0.4 -0.2 -2.2 -0.1
temperature LB 26C sample1 +0.1 -0.0 +0.0 -2.7 -0.1
stress Def 2-Furfuraldehyde 0.032 vol% +0.1 -0.6 -0.6 -1.6 +0.1
RCH2 grown on a colony of Serratia +0.2 +0.6 -0.4 -3.2 +0.3
stress Cobalt chloride 0.07 mM -0.1 -0.1 +0.2 -2.3 -0.2
stress acetate 80 mM -0.4 +0.4 +0.0 -2.3 -0.2
stress Lomefloxacin 0.0001 mM +0.2 -0.1 -0.2 -2.4 +0.2
stress Cobalt chloride 0.06 mM -0.1 -0.4 +0.3 -2.1 +0.2
lb LB +0.3 -0.0 -0.1 -2.3 +0.0
stress Furfuryl Alcohol 0.2 vol% +0.1 +0.1 +0.5 -2.0 -0.2
stress Choline chloride 90 mM -0.0 -0.2 +0.5 -1.8 +0.3
stress Spectinomycin 0.00625 mg/ml -0.2 -0.1 -0.6 +1.7 -0.1
nitrogen source L-Glutamic (N) +0.1 +0.1 -0.0 +2.0 -0.5
stress 5-Hydroxymethylfurfural 5 mM -0.2 +0.3 +0.5 +1.8 +0.2
carbon source L-tyrosine (C) -0.3 +0.0 +0.6 +2.1 +0.2
stress Lactate-nitrate; anaerobic; nickel stress sample2 +0.4 -0.1 +0.1 +2.2 +0.1
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