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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0535 and Psest_0536 are separated by 55 nucleotides
Psest_0536 and Psest_0537 are separated by 14 nucleotides
Psest_0537 and Psest_0538 are separated by 222 nucleotides
Psest_0538 and Psest_0539 are separated by 130 nucleotides
Psest_0535: Psest_0535 - glutamate-1-semialdehyde-2,1-aminomutase, at 587,985 to 589,268
_0535
Psest_0536: Psest_0536 - thiamine-phosphate pyrophosphorylase, at 589,324 to 589,965
_0536
Psest_0537: Psest_0537 - Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase, at 589,980 to 590,774
_0537
Psest_0538: Psest_0538 - Signal transduction histidine kinase, at 590,997 to 592,997
_0538
Psest_0539: Psest_0539 - Acyl-CoA dehydrogenases, at 593,128 to 594,774
_0539
Group
Condition
Psest
_0535
Psest
_0536
Psest
_0537
Psest
_0538
Psest
_0539
stress
Def Benzethonium chloride 0.008 mM
N.D.
-5.0
-5.1
-1.9
+0.2
vitamin
No vitamins t2
N.D.
-4.0
-4.1
-0.6
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
-3.1
-4.1
-1.1
+0.2
RCH2 grown on a colony of ecoli
N.D.
-3.1
-3.7
-0.6
-0.1
vitamin
No vitamins t1
N.D.
-2.4
-3.3
-0.6
-0.2
RCH2 grown on a colony of Serratia
N.D.
-1.4
-2.6
-3.0
+0.6
RCH2 grown on a colony of ecoli
N.D.
-3.4
-1.8
-0.5
+0.0
stress
Def methylglyoxal 0.01 vol%
N.D.
-1.8
-4.9
+1.0
+0.2
stress
Def Tetracycline 0.0004 mg/ml
N.D.
-2.1
-2.5
-0.9
+0.1
carbon source
L-tyrosine (C)
N.D.
-4.2
-4.9
+4.1
+0.1
stress
Def Fusidic 0.032 mg/ml
N.D.
-2.3
-3.2
+0.6
+0.1
carbon source
L-tyrosine (C)
N.D.
-3.7
-5.1
+4.1
+0.2
RCH2 grown on a colony of 8R2A
N.D.
-2.7
-3.0
+1.8
+0.3
carbon source
RCH2 defined media
N.D.
-2.4
-2.7
+1.9
+0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
-2.9
-3.2
+3.7
+0.8
stress
Def Polymyxin B sulfate 0.0001 mg/ml
N.D.
-3.0
-1.9
+2.8
+0.6
stress
Def Cisplatin 0.0002 mg/ml
N.D.
-2.4
-1.3
+2.3
+0.1
stress
Def Carbenicillin 0.008 mg/ml
N.D.
-1.9
-3.9
+3.9
+0.7
stress
Def Chloride 400 mM
N.D.
-1.6
-2.1
+2.7
+0.1
temperature
LB 26C sample1
N.D.
+0.8
-3.4
+1.8
+0.1
stress
Def Polymyxin B sulfate 0.00008 mg/ml
N.D.
-1.8
-1.6
+2.5
+0.5
carbon source
RCH2 defined media
N.D.
-1.6
-1.4
+2.0
+0.5
radiation
Ionizing radiation, 0 Gy
N.D.
-2.0
-1.4
+3.0
+0.1
stress
Def Carbenicillin 0.02 mg/ml
N.D.
+0.1
-2.8
+2.4
+0.2
radiation
Ionizing radiation, 319.06 Gy,
N.D.
-3.1
-0.9
+4.6
+0.1
radiation
Ionizing radiation, 319.06 Gy,
N.D.
-2.7
-1.0
+4.5
+0.3
stress
Cephalothin 0.04 mg/ml
N.D.
+0.9
-1.6
+2.5
+0.9
nitrogen source
nitrite (N)
N.D.
+1.0
-0.9
+3.2
+0.8
carbon source
butyrate (C)
N.D.
+0.2
-0.9
+4.7
+0.8
nitrogen source
nitrite (N)
N.D.
+0.8
-0.6
+3.6
+1.0
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