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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0505 and Psest_0506 are separated by 10 nucleotides
Psest_0506 and Psest_0507 are separated by 27 nucleotides
Psest_0507 and Psest_0508 are separated by 216 nucleotides
Psest_0508 and Psest_0509 overlap by 1 nucleotides
Psest_0505: Psest_0505 - Putative effector of murein hydrolase, at 559,098 to 559,817
_0505
Psest_0506: Psest_0506 - Uncharacterized protein, similar to the N-terminal domain of Lon protease, at 559,828 to 560,412
_0506
Psest_0507: Psest_0507 - Uncharacterized membrane-associated protein, at 560,440 to 561,759
_0507
Psest_0508: Psest_0508 - gamma-glutamyl phosphate reductase, at 561,976 to 563,241
_0508
Psest_0509: Psest_0509 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 563,241 to 563,900
_0509
Group
Condition
Psest
_0505
Psest
_0506
Psest
_0507
Psest
_0508
Psest
_0509
carbon source
Glycolic Acid (C)
-2.6
-0.1
-0.2
-6.1
N.D.
carbon source
Glycolic Acid (C)
-2.4
+0.0
-0.1
-6.0
N.D.
nitrogen source
D-Alanine (N)
-0.3
-0.4
-0.2
-6.9
N.D.
nitrogen source
Ammonium chloride (N)
-0.1
-0.5
-0.3
-6.9
N.D.
carbon source
a-Ketoglutaric (C)
-0.3
-0.3
+0.0
-7.1
N.D.
carbon source
Tween 20 (C)
-0.4
+0.0
-0.2
-7.2
N.D.
carbon source
D-Fructose (C)
+0.2
-0.4
-0.2
-7.3
N.D.
nitrogen source
L-Alanine (N)
-0.5
-0.1
-0.2
-6.6
N.D.
nitrogen source
D-Alanine (N)
-0.5
-0.3
+0.1
-6.7
N.D.
stress
Def Chloride 400 mM
+0.0
-0.7
-1.1
-5.5
N.D.
carbon source
Glycerol (C)
-0.4
+0.5
-0.0
-7.4
N.D.
carbon source
Fumarate (C)
+0.3
+0.3
-0.0
-7.8
N.D.
carbon source
D-Alanine (C)
+0.2
-0.1
+0.1
-7.3
N.D.
nitrogen source
Adenine (N)
-0.1
+0.1
-0.0
-7.0
N.D.
carbon source
D-Maltose (C)
-0.1
+0.1
-0.1
-7.1
N.D.
carbon source
D,L-Lactate (C)
-0.1
+0.2
-0.3
-6.9
N.D.
carbon source
L-Lactate (C)
-0.1
+0.2
+0.4
-7.5
N.D.
carbon source
D-Maltose (C)
+0.1
+0.0
+0.1
-7.3
N.D.
carbon source
L-Glutamine (C)
+0.1
-0.2
+0.1
-6.9
N.D.
carbon source
D-Glucose (C)
-0.4
+0.5
-0.0
-6.9
N.D.
carbon source
L-Glutamic (C)
-0.1
-0.1
+0.3
-7.0
N.D.
carbon source
D-Glucose (C)
+0.2
+0.1
+0.0
-7.2
N.D.
carbon source
L-Asparagine (C)
-0.4
+0.3
+0.1
-6.9
N.D.
carbon source
Trisodium citrate (C)
-0.2
+0.4
-0.1
-6.9
N.D.
carbon source
Tween 20 (C)
+0.1
+0.4
-0.4
-6.7
N.D.
carbon source
L-Asparagine (C)
-0.1
+0.1
+0.2
-6.9
N.D.
carbon source
succinate (C)
+0.0
+0.3
+0.0
-6.8
N.D.
carbon source
Trisodium citrate (C)
+0.3
+0.0
+0.2
-6.6
N.D.
temperature
Glucose defined 30C timecourse1 timepoint 3
-0.1
+0.7
+0.1
-6.3
N.D.
stress
Def methylglyoxal 0.01 vol%
-0.3
+0.5
+0.6
-5.8
N.D.
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