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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0478 and Psest_0479 are separated by 217 nucleotides
Psest_0479 and Psest_0480 overlap by 4 nucleotides
Psest_0480 and Psest_0481 are separated by 153 nucleotides
Psest_0481 and Psest_0482 are separated by 166 nucleotides
Psest_0478: Psest_0478 - Protein of unknown function (DUF3298)., at 528,682 to 529,419
_0478
Psest_0479: Psest_0479 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 529,637 to 530,254
_0479
Psest_0480: Psest_0480 - Uncharacterized protein conserved in bacteria, at 530,251 to 530,697
_0480
Psest_0481: Psest_0481 - Predicted phosphohydrolases, at 530,851 to 531,666
_0481
Psest_0482: Psest_0482 - yqiA-like hydrolase, affects the cell envelope
(from data)
, at 531,833 to 532,438
_0482
Group
Condition
Psest
_0478
Psest
_0479
Psest
_0480
Psest
_0481
Psest
_0482
stress
Doxycycline hyclate 0.0002 mg/ml
+0.0
-0.4
-0.3
N.D.
-2.2
stress
Def Carbenicillin 0.008 mg/ml
+0.6
-0.4
-0.8
N.D.
-2.3
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
-0.3
-0.4
N.D.
-1.8
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.6
-0.2
-0.8
N.D.
-2.0
stress
L-Lysine 200 mM
-3.6
+0.3
-0.1
N.D.
+1.2
stress
Bacitracin 0.25 mg/ml
-0.3
-0.3
+0.2
N.D.
-1.8
stress
Nalidixic 0.00390625 mg/ml
+0.2
-0.1
-0.7
N.D.
-1.2
stress
Bacitracin 0.25 mg/ml
-0.8
+0.2
+0.1
N.D.
-1.3
stress
L-Lysine 200 mM
-3.0
-0.1
-0.0
N.D.
+1.5
stress
Carbenicillin 0.008 mg/ml
-0.1
+0.2
+0.0
N.D.
-1.7
stress
Cephalothin 0.04 mg/ml
+0.5
-0.1
-0.9
N.D.
-0.7
stress
Chlorate 75 mM
-0.5
-0.5
+0.2
N.D.
-0.4
stress
Fusidic 0.016 mg/ml
+0.2
-0.3
-0.7
N.D.
-0.3
carbon source
L-Glutamine (C)
-0.1
+0.1
+0.1
N.D.
-1.3
stress
Phosphomycin 0.012 mg/ml
-0.2
+1.0
+0.1
N.D.
-1.7
stress
Gentamicin 0.0016 mg/ml
+0.5
+0.1
-0.5
N.D.
-0.6
stress
Phosphomycin 0.012 mg/ml
-0.0
+1.0
-0.0
N.D.
-1.5
stress
Furfuryl Alcohol 0.05 vol%
-1.0
+0.4
+0.3
N.D.
-0.4
stress
Def Benzethonium chloride 0.008 mM
+0.6
-0.4
-0.6
N.D.
-0.1
nitrogen source
nitrite (N)
+1.0
-0.1
-0.7
N.D.
-0.4
stress
nitrate 250 mM
+0.1
-0.4
-1.0
N.D.
+0.9
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.7
+0.2
+0.6
N.D.
-0.1
stress
A22 0.002 mg/ml
+0.2
-0.0
-0.4
N.D.
+0.9
carbon source
butyrate (C)
+0.6
+0.0
-0.6
N.D.
+0.8
RCH2 grown on a colony of N2A2
-0.4
+0.3
+0.2
N.D.
+0.7
stress
Neomycin 0.004 mg/ml
+0.2
-0.1
-0.3
N.D.
+1.1
carbon source
L-tyrosine (C)
+0.3
-0.0
-0.4
N.D.
+1.4
stress
Neomycin 0.004 mg/ml
-0.4
+0.2
+0.1
N.D.
+1.7
stress
Neomycin 0.004 mg/ml
-0.3
-0.1
-0.1
N.D.
+2.2
carbon source
L-tyrosine (C)
-0.1
+0.5
-0.1
N.D.
+1.6
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