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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Number of genes on each side:
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5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_4403 and Psest_4404 are separated by 969 nucleotides
Psest_4404 and Psest_4405 overlap by 4 nucleotides
Psest_4405 and Psest_4406 overlap by 1 nucleotides
Psest_4406 and Psest_4409 are separated by 867 nucleotides
Psest_4403: Psest_4403 - hypothetical protein, at 5,331 to 5,651
_4403
Psest_4404: Psest_4404 - hypothetical protein, at 6,621 to 6,893
_4404
Psest_4405: Psest_4405 - hypothetical protein, at 6,890 to 7,069
_4405
Psest_4406: Psest_4406 - hypothetical protein, at 7,069 to 7,275
_4406
Psest_4409: Psest_4409 - hypothetical protein, at 8,143 to 8,763
_4409
Group
Condition
Psest
_4403
Psest
_4404
Psest
_4405
Psest
_4406
Psest
_4409
RCH2 grown on a colony of Serratia
-1.3
+0.7
-1.1
-2.9
-0.1
stress
Carbenicillin 0.0065 mg/ml
-0.5
+0.3
-1.8
-2.1
+0.1
stress
Nickel (II) chloride 0.8 mM
+0.1
+0.0
-1.7
-2.4
-0.0
nitrogen source
L-Citrulline (N)
-0.6
+0.3
-0.3
-2.9
-0.0
stress
Aluminum chloride 0.3 mM
+0.0
+0.3
-2.0
-1.5
-0.4
lb
LB
-0.8
-0.2
-1.7
-0.9
+0.1
RCH2 grown on a colony of N2F3
-0.1
+0.2
-2.7
-1.2
+0.5
RCH2 grown on a colony of ecoli
-0.0
+0.0
+1.0
-4.1
+0.0
stress
Nickel (II) chloride 1 mM
-0.1
+0.2
-1.4
-2.2
+0.4
stress
Choline Lysine 20 mM
+0.1
+0.2
-1.6
-1.7
-0.0
stress
Paraquat dichloride 0.015 mg/ml
+1.1
-0.2
-1.4
-3.0
+0.5
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.4
-0.1
-0.2
-2.8
+0.6
lb
LB
-0.7
-0.1
+1.5
-3.4
-0.1
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.1
+0.4
-2.8
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.8
+0.3
+0.7
-2.3
-0.3
stress
Def Chlorate 40 mM
-1.1
-0.2
+0.7
-1.5
-0.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.4
+0.1
+1.0
-3.5
+0.6
nitrogen source
nitrate (N)
+0.6
+0.0
-0.7
-2.1
+0.1
stress
5-Hydroxymethylfurfural 5 mM
+0.1
-0.1
-1.1
-1.6
+1.1
stress
Zinc 0.12 mM
+0.0
+0.0
+1.5
-2.8
-0.2
stress
Furfuryl Alcohol 0.2 vol%
+1.2
+0.1
-0.2
-2.6
+0.5
nitrogen source
nitrite (N)
+0.9
-0.2
-1.8
+0.8
+0.3
vitamin
No vitamins t1
-0.8
+0.0
-1.0
+1.8
+0.0
lb
LB
-0.1
-0.3
+2.0
-1.1
+0.2
radiation
Ionizing radiation, 319.06 Gy,
+1.4
-0.2
+0.1
-1.4
+0.8
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.7
-0.1
+0.8
+1.6
-0.6
stress
Phosphomycin 0.012 mg/ml
+0.8
-0.2
-1.5
+1.8
+0.2
RCH2 grown on a colony of 8R2A
+0.8
-0.0
-1.1
+1.7
+0.4
carbon source
propionate (C)
+0.3
-0.1
+1.0
+2.8
+0.1
carbon source
propionate (C)
+0.2
+0.3
-0.0
+3.7
+0.2
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