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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4380 and Psest_4381 are separated by 317 nucleotides
Psest_4381 and Psest_4382 are separated by 262 nucleotides
Psest_4382 and Psest_4383 are separated by 107 nucleotides
Psest_4383 and Psest_4384 are separated by 138 nucleotides
Psest_4380: Psest_4380 - Domain of Unknown Function (DUF326)., at 2,905 to 3,231
_4380
Psest_4381: Psest_4381 - Protein of unknown function (DUF1652)., at 3,549 to 3,839
_4381
Psest_4382: Psest_4382 - hypothetical protein, at 4,102 to 4,335
_4382
Psest_4383: Psest_4383 - Site-specific recombinases, DNA invertase Pin homologs, at 4,443 to 5,000
_4383
Psest_4384: Psest_4384 - hypothetical protein, at 5,139 to 5,330
_4384
Group
Condition
Psest
_4380
Psest
_4381
Psest
_4382
Psest
_4383
Psest
_4384
stress
Def Benzethonium chloride 0.008 mM
+0.1
-0.7
+0.1
-1.0
N.D.
stress
Carbenicillin 0.0065 mg/ml
-0.7
+0.4
-1.3
+0.5
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
-0.9
+0.8
-1.1
N.D.
stress
Def Carbenicillin 0.008 mg/ml
+0.4
-0.5
+0.3
-1.0
N.D.
RCH2 grown on a colony of Serratia
-0.0
+0.3
-1.3
+0.3
N.D.
stress
Carbenicillin 0.008 mg/ml
-0.6
+0.6
-1.1
+0.5
N.D.
stress
Carbenicillin 0.008 mg/ml
-1.1
+0.9
-0.9
+0.4
N.D.
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.2
-0.5
+0.5
-0.8
N.D.
carbon source
RCH2 defined media
+0.4
-0.5
+0.3
-0.7
N.D.
stress
Carbenicillin 0.0065 mg/ml
-0.3
+0.4
-1.0
+0.5
N.D.
stress
Cephalothin 0.04 mg/ml
+0.6
-0.3
+0.6
-1.0
N.D.
nitrogen source
Parabanic Acid (N)
+0.2
-0.3
+0.6
-0.6
N.D.
nitrogen source
nitrite (N)
+0.2
-0.2
+0.7
-0.7
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.3
-0.3
+0.8
-0.7
N.D.
nitrogen source
L-Isoleucine (N)
+0.1
-0.1
+1.1
-0.9
N.D.
anaerobic
nitrate reduction - anaerobic
+0.3
-0.1
+0.7
-0.7
N.D.
RCH2 grown on a colony of Serratia
+0.0
+0.6
-0.9
+0.5
N.D.
nitrogen source
L-Isoleucine (N)
+0.2
-0.3
+0.8
-0.5
N.D.
nitrogen source
Cytosine (N)
+0.4
-0.1
+0.6
-0.5
N.D.
nitrogen source
nitrite (N)
+0.3
-0.2
+0.8
-0.7
N.D.
carbon source
Glycolic Acid (C)
+0.0
-0.3
+1.2
-0.1
N.D.
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.6
-0.2
+1.1
-0.6
N.D.
radiation
Ionizing radiation, 0 Gy
+0.4
-0.1
+1.1
-0.3
N.D.
radiation
Ionizing radiation, 319.06 Gy,
-0.1
-0.1
+2.0
-0.4
N.D.
carbon source
Glycolic Acid (C)
+0.4
-0.2
+1.3
-0.1
N.D.
carbon source
L-Alanine (C)
+0.1
+0.3
+1.3
-0.2
N.D.
stress
Neomycin 0.004 mg/ml
-0.1
+0.1
+0.9
+0.6
N.D.
stress
Def Chloride 400 mM
+0.6
-0.0
+1.2
-0.2
N.D.
radiation
Ionizing radiation, 319.06 Gy,
-0.1
+0.1
+2.1
-0.2
N.D.
carbon source
L-Alanine (C)
-0.1
+0.4
+1.6
-0.1
N.D.
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