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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0041 and Psest_0042 are separated by 118 nucleotides
Psest_0042 and Psest_0043 are separated by 143 nucleotides
Psest_0043 and Psest_0044 are separated by 224 nucleotides
Psest_0044 and Psest_0045 are separated by 414 nucleotides
Psest_0041: Psest_0041 - Uncharacterized protein conserved in bacteria, at 43,886 to 45,367
_0041
Psest_0042: Psest_0042 - Transcriptional regulator, at 45,486 to 46,388
_0042
Psest_0043: Psest_0043 - Predicted membrane protein, at 46,532 to 47,083
_0043
Psest_0044: Psest_0044 - Nuclease-related domain., at 47,308 to 47,583
_0044
Psest_0045: Psest_0045 - hypothetical protein, at 47,998 to 48,375
_0045
Group
Condition
Psest
_0041
Psest
_0042
Psest
_0043
Psest
_0044
Psest
_0045
nitrogen source
nitrite (N)
-1.1
N.D.
-0.5
-0.1
-1.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.8
N.D.
-0.2
-0.2
-1.4
nitrogen source
L-Isoleucine (N)
-0.3
N.D.
-0.5
-0.6
-1.1
RCH2 grown on a colony of Serratia
-1.5
N.D.
-0.2
-0.5
+0.1
anaerobic
nitrate reduction - anaerobic
-0.5
N.D.
-0.5
-0.1
-1.0
stress
Def Phosphomycin 0.125 mg/ml
-1.0
N.D.
-0.2
-0.6
-0.2
stress
nitrate 250 mM
-0.9
N.D.
-0.4
+0.3
-0.8
stress
Cephalothin 0.04 mg/ml
-0.3
N.D.
-0.3
+0.3
-1.4
stress
Nalidixic 0.00390625 mg/ml
-1.3
N.D.
-0.2
-0.3
+0.0
stress
Def Benzethonium chloride 0.008 mM
+0.2
N.D.
-0.4
+0.1
-1.4
lb
LB
-1.6
N.D.
-0.0
+0.0
+0.1
stress
Paraquat dichloride 0.015 mg/ml
-0.4
N.D.
+0.1
+0.3
-1.0
stress
Nickel (II) chloride 0.9 mM
-0.9
N.D.
-0.1
-0.2
+0.7
stress
Fusidic 0.016 mg/ml
+0.4
N.D.
-0.4
+0.6
-0.8
RCH2 grown on a colony of Serratia
+0.7
N.D.
+0.1
+0.1
-1.0
stress
Gentamicin 0.0016 mg/ml
+0.2
N.D.
+0.0
+0.5
-0.9
RCH2 grown on a colony of ecoli
+1.3
N.D.
-0.1
-0.4
-0.7
stress
Def Carbenicillin 0.008 mg/ml
+0.6
N.D.
+0.1
+0.5
-1.0
stress
D-Cycloserine 0.032 mg/ml
-0.8
N.D.
+0.2
+0.2
+0.7
stress
Furfuryl Alcohol 0.05 vol%
+0.8
N.D.
-0.3
-0.6
+0.5
carbon source
Glucose defined media
-0.5
N.D.
+0.3
-0.0
+0.8
stress
A22 0.002 mg/ml
+0.3
N.D.
-0.6
+0.5
+0.5
RCH2 grown on a colony of ecoli
+0.8
N.D.
-0.0
-0.4
+0.5
RCH2 grown on a colony of 8R2A
+1.4
N.D.
-0.2
+0.1
-0.1
temperature
LB 30C timecourse2 timepoint 2
+0.4
N.D.
+0.3
-0.3
+1.0
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+0.9
N.D.
+0.2
+0.4
-0.1
carbon source
propionate (C)
+0.9
N.D.
-0.2
+0.6
+0.4
nitrogen source
Putrescine (N)
+0.2
N.D.
+0.3
+0.4
+0.8
carbon source
propionate (C)
+1.6
N.D.
+0.0
+0.2
+0.1
stress
Def Neomycin 0.0008 mg/ml
+0.8
N.D.
+0.4
+0.7
+0.2
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