Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4343 and Psest_4344 are separated by 82 nucleotidesPsest_4344 and Psest_4345 are separated by 228 nucleotidesPsest_4345 and Psest_4346 overlap by 1 nucleotidesPsest_4346 and Psest_4347 are separated by 67 nucleotides Psest_4343: Psest_4343 - Protein of unknown function (DUF3301)., at 4,542,235 to 4,542,609 _4343 Psest_4344: Psest_4344 - hypothetical protein, at 4,542,692 to 4,543,099 _4344 Psest_4345: Psest_4345 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 4,543,328 to 4,545,598 _4345 Psest_4346: Psest_4346 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,545,598 to 4,546,071 _4346 Psest_4347: Psest_4347 - PAS domain S-box, at 4,546,139 to 4,548,544 _4347
Group Condition Psest_4343 Psest_4344 Psest_4345 Psest_4346 Psest_4347
stress nitrate 250 mM +0.1 -0.9 -1.8 -1.2 -0.8
stress Def Benzethonium chloride 0.008 mM +0.4 -0.6 -2.5 -1.5 -0.3
stress Lactate-nitrate; anaerobic; nickel stress sample2 -0.7 -0.1 -1.4 -1.0 -0.5
carbon source butyrate (C) -0.3 +0.2 -1.9 -0.7 -0.8
metal limitation Lactate-nitrite; anaerobic; sample3 -0.5 +0.1 -1.6 -1.2 -0.3
stress Def Benzalkonium Chloride 0.002 mg/ml +0.4 -0.0 -2.7 -0.2 -0.6
stress Lactate-nitrate; anaerobic; nickel stress sample1 -0.2 +0.1 -1.9 -0.8 -0.2
stress Lactate-nitrate; anaerobic; copper stress sample2 -0.6 -0.1 -1.3 -1.0 -0.2
stress Benzethonium chloride 0.0125 mM -1.4 -0.3 -1.1 -0.3 -0.1
metal limitation Lactate-nitrite; anaerobic; sample1 -0.5 +0.2 -1.4 -0.9 -0.3
stress Lactate-nitrate; anaerobic; copper stress sample1 -0.4 -0.1 -1.6 -0.8 -0.1
stress Gentamicin 0.0016 mg/ml -0.3 +0.2 -2.2 -0.2 -0.4
stress Polymyxin B sulfate 0.0001 mg/ml -2.1 -0.3 +0.1 -0.3 -0.3
metal limitation Lactate-nitrite; anaerobic; sample2 -0.4 +0.1 -1.6 -0.6 -0.3
stress Def 2-Furfuraldehyde 0.032 vol% +0.1 +0.3 -2.5 +0.0 -0.6
stress Lactate-nitrate; anaerobic; copper stress sample3 +0.2 +0.0 -1.6 -1.0 -0.3
stress nitrate 200 mM +0.4 -0.7 -1.5 -0.5 -0.3
stress Def Polymyxin B sulfate 0.00008 mg/ml +0.2 +0.2 -1.6 -0.5 -0.5
stress Cephalothin 0.04 mg/ml +0.6 +0.3 -2.2 -0.4 -0.6
nitrogen source nitrite (N) +0.5 +0.1 -1.3 -0.5 -0.7
RCH2 grown on a colony of 8R2A +0.4 +0.3 -0.6 -0.9 -0.7
stress Def Nalidixic 0.001 mg/ml +0.3 +0.2 -1.6 +0.2 -0.6
carbon source L-tyrosine (C) -1.0 -0.9 +0.4 +0.8 -0.2
stress Carbenicillin 0.0065 mg/ml -1.5 -0.1 +1.3 +0.0 +0.1
stress Carbenicillin 0.008 mg/ml -0.9 -0.7 +2.1 -0.6 +0.5
stress Carbenicillin 0.0065 mg/ml -0.3 -0.4 +1.3 -0.5 +0.4
nitrogen source L-Glutamic (N) +1.1 +0.6 -0.7 +0.6 -0.2
stress Carbenicillin 0.008 mg/ml -0.1 -0.9 +2.3 -0.7 +0.8
carbon source L-tyrosine (C) +0.7 -0.5 +0.7 +0.8 -0.3
carbon source propionate (C) +0.6 -0.0 +1.8 +0.4 +0.1
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