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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4343 and Psest_4344 are separated by 82 nucleotides
Psest_4344 and Psest_4345 are separated by 228 nucleotides
Psest_4345 and Psest_4346 overlap by 1 nucleotides
Psest_4346 and Psest_4347 are separated by 67 nucleotides
Psest_4343: Psest_4343 - Protein of unknown function (DUF3301)., at 4,542,235 to 4,542,609
_4343
Psest_4344: Psest_4344 - hypothetical protein, at 4,542,692 to 4,543,099
_4344
Psest_4345: Psest_4345 - Bacteriophytochrome (light-regulated signal transduction histidine kinase), at 4,543,328 to 4,545,598
_4345
Psest_4346: Psest_4346 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,545,598 to 4,546,071
_4346
Psest_4347: Psest_4347 - PAS domain S-box, at 4,546,139 to 4,548,544
_4347
Group
Condition
Psest
_4343
Psest
_4344
Psest
_4345
Psest
_4346
Psest
_4347
stress
nitrate 250 mM
+0.1
-0.9
-1.8
-1.2
-0.8
stress
Def Benzethonium chloride 0.008 mM
+0.4
-0.6
-2.5
-1.5
-0.3
stress
Lactate-nitrate; anaerobic; nickel stress sample2
-0.7
-0.1
-1.4
-1.0
-0.5
carbon source
butyrate (C)
-0.3
+0.2
-1.9
-0.7
-0.8
metal limitation
Lactate-nitrite; anaerobic; sample3
-0.5
+0.1
-1.6
-1.2
-0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
-0.0
-2.7
-0.2
-0.6
stress
Lactate-nitrate; anaerobic; nickel stress sample1
-0.2
+0.1
-1.9
-0.8
-0.2
stress
Lactate-nitrate; anaerobic; copper stress sample2
-0.6
-0.1
-1.3
-1.0
-0.2
stress
Benzethonium chloride 0.0125 mM
-1.4
-0.3
-1.1
-0.3
-0.1
metal limitation
Lactate-nitrite; anaerobic; sample1
-0.5
+0.2
-1.4
-0.9
-0.3
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.4
-0.1
-1.6
-0.8
-0.1
stress
Gentamicin 0.0016 mg/ml
-0.3
+0.2
-2.2
-0.2
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
-2.1
-0.3
+0.1
-0.3
-0.3
metal limitation
Lactate-nitrite; anaerobic; sample2
-0.4
+0.1
-1.6
-0.6
-0.3
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
+0.3
-2.5
+0.0
-0.6
stress
Lactate-nitrate; anaerobic; copper stress sample3
+0.2
+0.0
-1.6
-1.0
-0.3
stress
nitrate 200 mM
+0.4
-0.7
-1.5
-0.5
-0.3
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.2
+0.2
-1.6
-0.5
-0.5
stress
Cephalothin 0.04 mg/ml
+0.6
+0.3
-2.2
-0.4
-0.6
nitrogen source
nitrite (N)
+0.5
+0.1
-1.3
-0.5
-0.7
RCH2 grown on a colony of 8R2A
+0.4
+0.3
-0.6
-0.9
-0.7
stress
Def Nalidixic 0.001 mg/ml
+0.3
+0.2
-1.6
+0.2
-0.6
carbon source
L-tyrosine (C)
-1.0
-0.9
+0.4
+0.8
-0.2
stress
Carbenicillin 0.0065 mg/ml
-1.5
-0.1
+1.3
+0.0
+0.1
stress
Carbenicillin 0.008 mg/ml
-0.9
-0.7
+2.1
-0.6
+0.5
stress
Carbenicillin 0.0065 mg/ml
-0.3
-0.4
+1.3
-0.5
+0.4
nitrogen source
L-Glutamic (N)
+1.1
+0.6
-0.7
+0.6
-0.2
stress
Carbenicillin 0.008 mg/ml
-0.1
-0.9
+2.3
-0.7
+0.8
carbon source
L-tyrosine (C)
+0.7
-0.5
+0.7
+0.8
-0.3
carbon source
propionate (C)
+0.6
-0.0
+1.8
+0.4
+0.1
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