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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4336 and Psest_4337 are separated by 69 nucleotides
Psest_4337 and Psest_4338 are separated by 100 nucleotides
Psest_4338 and Psest_4339 overlap by 1 nucleotides
Psest_4339 and Psest_4340 are separated by 166 nucleotides
Psest_4336: Psest_4336 - Uncharacterized iron-regulated membrane protein, at 4,534,738 to 4,535,925
_4336
Psest_4337: Psest_4337 - TonB-dependent siderophore receptor, at 4,535,995 to 4,538,487
_4337
Psest_4338: Psest_4338 - Fe2+-dicitrate sensor, membrane component, at 4,538,588 to 4,539,550
_4338
Psest_4339: Psest_4339 - DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog, at 4,539,550 to 4,540,065
_4339
Psest_4340: Psest_4340 - Protein of unknown function (DUF3617)., at 4,540,232 to 4,540,759
_4340
Group
Condition
Psest
_4336
Psest
_4337
Psest
_4338
Psest
_4339
Psest
_4340
stress
Aluminum chloride 0.3 mM
-0.1
-0.0
-3.0
+0.3
-0.4
stress
Cobalt chloride 0.07 mM
-0.6
-0.3
-1.0
-0.6
-0.6
stress
Cobalt chloride 0.08 mM
-0.7
-0.5
-0.7
-0.4
-0.4
stress
Cobalt chloride 0.07 mM
-0.5
-0.4
-1.0
-0.8
+0.3
stress
Chlorate 75 mM
+0.1
+0.2
-0.5
-0.8
-1.0
stress
Cobalt chloride 0.08 mM
-0.4
-0.5
-1.2
-0.5
+0.6
stress
Neomycin 0.004 mg/ml
-0.1
+0.3
-1.4
+0.1
-0.7
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.2
-0.9
-0.0
-1.0
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.6
+0.0
-1.2
+0.2
+0.2
stress
Cobalt chloride 0.05 mM
-0.0
-0.4
-1.0
-0.5
+0.6
stress
Neomycin 0.004 mg/ml
-0.1
+0.5
-1.4
+0.3
-0.3
stress
A22 0.002 mg/ml
+0.1
+0.4
-0.5
+0.3
-0.9
stress
syringaldehyde 4 mM
+0.1
+0.1
-1.6
+0.5
+0.3
stress
acetate 80 mM
+0.3
+0.1
-1.4
+0.1
+0.4
stress
Thallium(I) acetate 0.09 mg/ml
+0.3
+0.7
-1.8
+0.7
-0.1
stress
A22 0.005 mg/ml
+0.3
+0.7
-1.2
+0.6
-0.5
RCH2 grown on a colony of N2A2
-0.7
+0.1
+0.6
+0.7
-0.6
stress
Chlorite 0.06 mM
-0.0
+0.9
-1.6
+1.1
-0.2
stress
Thallium(I) acetate 0.1 mg/ml
+0.1
+0.7
-0.7
+0.5
-0.4
stress
Thallium(I) acetate 0.1 mg/ml
-0.0
+0.6
-1.3
+0.8
+0.4
stress
A22 0.005 mg/ml
-0.1
+0.3
-0.8
+1.0
-0.1
stress
Thallium(I) acetate 0.08 mg/ml
-0.0
+0.7
-0.4
+1.0
-0.3
stress
Furfuryl Alcohol 0.05 vol%
-0.1
+0.4
-0.5
+1.2
+0.2
stress
Thallium(I) acetate 0.08 mg/ml
+0.1
+0.7
-0.5
+0.5
+0.4
stress
Thallium(I) acetate 0.09 mg/ml
+0.4
+0.7
-1.1
+1.0
+0.3
carbon source
L-tyrosine (C)
+0.7
+1.0
+0.2
+0.7
-0.6
carbon source
L-tyrosine (C)
+0.5
+0.9
-0.2
+1.0
-0.1
stress
nitrate 250 mM
+0.3
+1.8
+0.1
+1.5
-1.0
stress
L-Lysine 200 mM
-0.1
+2.4
-0.2
+1.9
-0.1
stress
L-Lysine 200 mM
+0.2
+2.4
-0.4
+2.2
-0.2
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