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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4297 and Psest_4298 are separated by 0 nucleotides
Psest_4298 and Psest_4299 overlap by 8 nucleotides
Psest_4299 and Psest_4300 are separated by 128 nucleotides
Psest_4300 and Psest_4301 overlap by 4 nucleotides
Psest_4297: Psest_4297 - PAS domain S-box, at 4,491,792 to 4,494,203
_4297
Psest_4298: Psest_4298 - Response regulator containing a CheY-like receiver domain and a GGDEF domain, at 4,494,204 to 4,494,590
_4298
Psest_4299: Psest_4299 - diguanylate cyclase (GGDEF) domain, at 4,494,583 to 4,496,220
_4299
Psest_4300: Psest_4300 - PAS domain S-box, at 4,496,349 to 4,499,219
_4300
Psest_4301: Psest_4301 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,499,216 to 4,499,605
_4301
Group
Condition
Psest
_4297
Psest
_4298
Psest
_4299
Psest
_4300
Psest
_4301
nitrogen source
L-Isoleucine (N)
-1.7
-2.8
-0.6
-0.2
-1.7
carbon source
L-tyrosine (C)
-0.5
-4.8
-0.5
+0.0
-0.7
nitrogen source
L-Glutamic (N)
-1.1
-2.8
-0.1
-0.9
-0.5
stress
Def Benzethonium chloride 0.008 mM
-1.5
-3.3
-0.3
+0.1
-0.1
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-1.3
-3.1
-0.4
-0.0
+0.2
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-1.6
-3.4
-0.1
+0.2
+0.3
carbon source
butyrate (C)
-1.1
-3.3
-0.1
-0.0
+0.0
carbon source
butyrate (C)
-1.0
-3.4
+0.2
-0.2
+0.0
carbon source
butyrate (C)
-1.8
-2.8
+0.2
+0.1
+0.1
carbon source
RCH2 defined media
-0.5
-3.7
-0.1
-0.1
+0.2
nitrogen source
L-Glutamic (N)
-1.0
-2.9
+0.1
-0.1
-0.1
nitrogen source
Ammonium chloride (N)
-0.3
-2.9
-0.1
-0.4
-0.1
carbon source
L-Glutamic (C)
-1.3
-2.0
+0.0
-0.0
-0.5
stress
Def Carbenicillin 0.02 mg/ml
-0.9
-2.6
+0.3
-0.2
-0.1
carbon source
L-Glutamine (C)
-0.5
-3.1
+0.1
+0.1
+0.0
carbon source
succinate (C)
-0.3
-2.9
-0.0
-0.1
+0.1
carbon source
L-Glutamic (C)
-1.0
-2.4
+0.1
+0.0
+0.1
carbon source
Trisodium citrate (C)
-0.3
-2.5
-0.1
+0.3
-0.2
carbon source
RCH2 defined media
-1.4
-1.7
-0.2
+0.3
+0.3
stress
Carbenicillin 0.008 mg/ml
+0.5
-2.8
+0.1
+0.1
-0.6
radiation
Ionizing radiation, 319.06 Gy,
-0.4
-2.4
-0.2
+0.2
+0.2
stress
Nalidixic 0.00390625 mg/ml
+0.2
-2.8
-0.2
-0.0
+0.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.9
-1.9
+0.0
-0.2
+0.6
nitrogen source
Urea (N)
-0.3
-2.2
-0.2
-0.2
+0.5
RCH2 grown on a colony of N2F3
-0.3
-2.7
-0.0
+0.5
+0.2
stress
Chlorate 75 mM
-0.4
-2.6
+0.5
+0.0
+0.3
carbon source
propionate (C)
+0.5
-2.6
+0.1
+0.6
+0.2
RCH2 grown on a colony of N2A2
+0.4
+2.0
+0.4
-0.3
-1.2
carbon source
Glucose defined media
-0.2
+2.3
+0.2
-0.3
-0.3
RCH2 grown on a colony of Serratia
-0.1
+3.3
+0.2
-0.5
+0.2
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