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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4279 and Psest_4280 are separated by 202 nucleotides
Psest_4280 and Psest_4281 overlap by 4 nucleotides
Psest_4281 and Psest_4282 overlap by 4 nucleotides
Psest_4282 and Psest_4283 are separated by 150 nucleotides
Psest_4279: Psest_4279 - Uncharacterized protein involved in response to NO, at 4,469,865 to 4,471,121
_4279
Psest_4280: Psest_4280 - ABC-type spermidine/putrescine transport system, permease component II, at 4,471,324 to 4,472,226
_4280
Psest_4281: Psest_4281 - ABC-type spermidine/putrescine transport system, permease component I, at 4,472,223 to 4,473,119
_4281
Psest_4282: Psest_4282 - spermidine/putrescine ABC transporter ATP-binding subunit, at 4,473,116 to 4,474,267
_4282
Psest_4283: Psest_4283 - Spermidine/putrescine-binding periplasmic protein, at 4,474,418 to 4,475,503
_4283
Group
Condition
Psest
_4279
Psest
_4280
Psest
_4281
Psest
_4282
Psest
_4283
nitrogen source
Putrescine (N)
-0.1
-4.8
-4.4
-4.7
+0.0
nitrogen source
Putrescine (N)
-0.1
-2.4
-3.0
-3.3
-0.6
nitrogen source
Putrescine (N)
-0.1
-2.7
-2.9
-3.1
-0.4
RCH2 grown on a colony of N2F3
-0.0
-3.7
-1.9
-2.5
+0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.3
-2.5
-2.3
-2.4
-0.6
RCH2 grown on a colony of N2F3
+0.3
-2.4
-2.4
-2.0
-0.3
nitrogen source
L-Alanine (N)
+0.1
-1.5
-1.4
-1.6
-0.2
nitrogen source
L-Alanine (N)
+0.0
-1.4
-1.3
-1.5
-0.1
carbon source
L-tyrosine (C)
-0.1
-0.9
-0.7
-0.3
-2.3
RCH2 grown on a colony of N2C3
+0.2
-1.1
-1.7
-1.4
+0.1
nitrogen source
D-Alanine (N)
+0.2
-1.4
-1.1
-0.9
-0.5
nitrogen source
L-Alanine (N)
+0.2
-0.2
-1.7
-1.6
-0.1
carbon source
L-Proline (C)
-0.1
-1.2
-0.8
-0.8
-0.3
nitrogen source
Adenine (N)
+0.1
-1.1
-0.9
-0.7
-0.5
stress
Def Chloride 400 mM
-0.0
-0.9
-1.0
-1.0
+0.1
carbon source
propionate (C)
-0.3
-0.9
-0.8
-0.7
+0.0
carbon source
Glycolic Acid (C)
+0.0
-1.0
-0.6
-0.4
-0.3
nitrogen source
D-Alanine (N)
+0.2
-0.4
-0.6
-0.6
-0.6
RCH2 grown on a colony of ecoli
+0.3
-1.7
-0.1
-0.2
-0.2
carbon source
propionate (C)
-0.3
-1.0
-0.6
-0.3
+0.4
RCH2 grown on a colony of Serratia
+0.5
-1.9
+0.1
-0.2
-0.1
stress
Doxycycline hyclate 0.0002 mg/ml
+0.8
-0.7
-0.2
-0.2
-1.1
stress
Choline chloride 90 mM
-0.4
-1.2
-0.2
-0.3
+1.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.6
+0.3
+0.4
+0.7
-0.4
stress
nitrate 250 mM
+0.5
+0.6
+1.0
+0.9
-0.9
stress
Cephalothin 0.04 mg/ml
+0.8
+0.8
+0.5
+0.6
-0.6
stress
Paraquat dichloride 0.015 mg/ml
+0.0
+0.7
+0.4
+0.3
+1.0
stress
Choline chloride 90 mM
+0.2
+0.6
+0.1
+0.3
+1.3
stress
Paraquat dichloride 0.015 mg/ml
+0.2
+0.6
+0.3
+0.5
+1.1
stress
Def Carbenicillin 0.008 mg/ml
+0.3
+1.0
+1.0
+1.0
-0.2
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