Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4245 and Psest_4246 are separated by 1 nucleotidesPsest_4246 and Psest_4247 overlap by 1 nucleotidesPsest_4247 and Psest_4248 overlap by 4 nucleotidesPsest_4248 and Psest_4249 are separated by 20 nucleotides Psest_4245: Psest_4245 - type IV / VI secretion system protein, DotU family, at 4,427,632 to 4,428,513 _4245 Psest_4246: Psest_4246 - type VI secretion protein IcmF, at 4,428,515 to 4,432,054 _4246 Psest_4247: Psest_4247 - Serine/threonine protein phosphatase, at 4,432,054 to 4,432,785 _4247 Psest_4248: Psest_4248 - Serine/threonine protein kinase, at 4,432,782 to 4,433,753 _4248 Psest_4249: Psest_4249 - Rhs element Vgr protein, at 4,433,774 to 4,435,819 _4249
Group Condition Psest_4245 Psest_4246 Psest_4247 Psest_4248 Psest_4249
stress Def Cephalothin 0.08 mg/ml +0.1 -0.2 -0.4 -0.8 -0.7
carbon source propionate (C) -0.4 +0.1 -1.7 -0.7 +0.8
carbon source L-tyrosine (C) +0.2 -0.1 -1.6 +0.1 -0.2
stress Def Vancomycin 0.008 mg/ml -0.5 -0.2 -1.1 -0.1 +0.3
stress Paraquat dichloride 0.015 mg/ml -0.6 +0.1 -1.1 +0.1 +0.1
nitrogen source L-Isoleucine (N) -0.4 -0.1 -0.8 -0.2 +0.3
stress acetate 80 mM +0.6 +0.0 -1.3 +0.0 -0.3
RCH2 grown on a colony of Serratia +0.3 -0.1 -0.9 +0.5 -0.2
nitrogen source nitrite (N) -0.7 +0.2 -0.3 +0.1 +0.4
nitrogen source L-Isoleucine (N) +0.3 +0.1 -0.8 -0.2 +0.3
carbon source L-tyrosine (C) +0.1 +0.1 +0.3 -1.0 +0.1
RCH2 grown on a colony of Serratia +0.3 -0.5 +0.4 -0.5 +0.5
stress Thallium(I) acetate 0.1 mg/ml -0.0 +0.1 -0.7 -0.1 +0.8
stress Def 2-Furfuraldehyde 0.032 vol% -0.3 +0.5 +0.8 -0.2 -0.3
stress Def Chlorate 40 mM +0.4 +0.4 -0.6 -0.1 +0.4
stress Def Carbenicillin 0.02 mg/ml -0.6 -0.3 +0.9 +0.7 -0.0
stress perchlorate 25 mM -0.2 -0.2 +0.9 +0.3 +0.1
stress Def Benzethonium chloride 0.008 mM -0.4 +0.4 +0.5 +0.2 +0.1
stress methylglyoxal 0.0016 vol% -0.2 -0.2 +0.8 +0.3 +0.3
stress Benzethonium chloride 0.0125 mM -0.5 +0.1 +0.8 +0.4 +0.2
lb LB +0.5 -0.2 +0.4 -0.3 +0.7
stress Def Polymyxin B sulfate 0.0001 mg/ml -0.3 +0.4 +0.6 +0.1 +0.5
temperature LB 30C timecourse2 timepoint 2 +0.3 -0.0 +0.7 -0.3 +0.6
stress Def Carbenicillin 0.008 mg/ml -0.8 +0.2 +0.7 +0.6 +0.7
stress Gentamicin 0.0016 mg/ml -0.4 +0.4 +0.7 +0.2 +0.6
stress Def Polymyxin B sulfate 0.00008 mg/ml -0.3 +0.5 +0.5 +0.5 +0.4
stress Def Chloride 400 mM +0.3 +0.3 +0.9 +0.1 +0.3
stress Doxycycline hyclate 0.0002 mg/ml +0.9 -0.1 +0.6 +0.4 +0.3
stress Cephalothin 0.04 mg/ml -0.3 +0.5 +0.9 +0.4 +0.6
stress Chlorate 75 mM +0.2 +0.3 +1.6 +0.0 +0.1
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