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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4245 and Psest_4246 are separated by 1 nucleotides
Psest_4246 and Psest_4247 overlap by 1 nucleotides
Psest_4247 and Psest_4248 overlap by 4 nucleotides
Psest_4248 and Psest_4249 are separated by 20 nucleotides
Psest_4245: Psest_4245 - type IV / VI secretion system protein, DotU family, at 4,427,632 to 4,428,513
_4245
Psest_4246: Psest_4246 - type VI secretion protein IcmF, at 4,428,515 to 4,432,054
_4246
Psest_4247: Psest_4247 - Serine/threonine protein phosphatase, at 4,432,054 to 4,432,785
_4247
Psest_4248: Psest_4248 - Serine/threonine protein kinase, at 4,432,782 to 4,433,753
_4248
Psest_4249: Psest_4249 - Rhs element Vgr protein, at 4,433,774 to 4,435,819
_4249
Group
Condition
Psest
_4245
Psest
_4246
Psest
_4247
Psest
_4248
Psest
_4249
stress
Def Cephalothin 0.08 mg/ml
+0.1
-0.2
-0.4
-0.8
-0.7
carbon source
propionate (C)
-0.4
+0.1
-1.7
-0.7
+0.8
carbon source
L-tyrosine (C)
+0.2
-0.1
-1.6
+0.1
-0.2
stress
Def Vancomycin 0.008 mg/ml
-0.5
-0.2
-1.1
-0.1
+0.3
stress
Paraquat dichloride 0.015 mg/ml
-0.6
+0.1
-1.1
+0.1
+0.1
nitrogen source
L-Isoleucine (N)
-0.4
-0.1
-0.8
-0.2
+0.3
stress
acetate 80 mM
+0.6
+0.0
-1.3
+0.0
-0.3
RCH2 grown on a colony of Serratia
+0.3
-0.1
-0.9
+0.5
-0.2
nitrogen source
nitrite (N)
-0.7
+0.2
-0.3
+0.1
+0.4
nitrogen source
L-Isoleucine (N)
+0.3
+0.1
-0.8
-0.2
+0.3
carbon source
L-tyrosine (C)
+0.1
+0.1
+0.3
-1.0
+0.1
RCH2 grown on a colony of Serratia
+0.3
-0.5
+0.4
-0.5
+0.5
stress
Thallium(I) acetate 0.1 mg/ml
-0.0
+0.1
-0.7
-0.1
+0.8
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.3
+0.5
+0.8
-0.2
-0.3
stress
Def Chlorate 40 mM
+0.4
+0.4
-0.6
-0.1
+0.4
stress
Def Carbenicillin 0.02 mg/ml
-0.6
-0.3
+0.9
+0.7
-0.0
stress
perchlorate 25 mM
-0.2
-0.2
+0.9
+0.3
+0.1
stress
Def Benzethonium chloride 0.008 mM
-0.4
+0.4
+0.5
+0.2
+0.1
stress
methylglyoxal 0.0016 vol%
-0.2
-0.2
+0.8
+0.3
+0.3
stress
Benzethonium chloride 0.0125 mM
-0.5
+0.1
+0.8
+0.4
+0.2
lb
LB
+0.5
-0.2
+0.4
-0.3
+0.7
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.3
+0.4
+0.6
+0.1
+0.5
temperature
LB 30C timecourse2 timepoint 2
+0.3
-0.0
+0.7
-0.3
+0.6
stress
Def Carbenicillin 0.008 mg/ml
-0.8
+0.2
+0.7
+0.6
+0.7
stress
Gentamicin 0.0016 mg/ml
-0.4
+0.4
+0.7
+0.2
+0.6
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.3
+0.5
+0.5
+0.5
+0.4
stress
Def Chloride 400 mM
+0.3
+0.3
+0.9
+0.1
+0.3
stress
Doxycycline hyclate 0.0002 mg/ml
+0.9
-0.1
+0.6
+0.4
+0.3
stress
Cephalothin 0.04 mg/ml
-0.3
+0.5
+0.9
+0.4
+0.6
stress
Chlorate 75 mM
+0.2
+0.3
+1.6
+0.0
+0.1
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