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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0414 and Psest_0415 are separated by 1 nucleotides
Psest_0415 and Psest_0416 are separated by 85 nucleotides
Psest_0416 and Psest_0417 are separated by 360 nucleotides
Psest_0417 and Psest_0418 are separated by 149 nucleotides
Psest_0414: Psest_0414 - biotin biosynthesis protein BioC, at 449,651 to 450,445
_0414
Psest_0415: Psest_0415 - dethiobiotin synthase, at 450,447 to 451,133
_0415
Psest_0416: Psest_0416 - hypothetical protein, at 451,219 to 451,467
_0416
Psest_0417: Psest_0417 - Acyl-CoA dehydrogenases, at 451,828 to 453,633
_0417
Psest_0418: Psest_0418 - diguanylate cyclase (GGDEF) domain, at 453,783 to 455,072
_0418
Group
Condition
Psest
_0414
Psest
_0415
Psest
_0416
Psest
_0417
Psest
_0418
carbon source
L-Proline (C)
-3.4
-2.8
+0.2
-2.6
-0.3
stress
Def Phosphomycin 0.125 mg/ml
-3.3
-2.8
+0.5
-2.4
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
-3.7
-3.1
-0.7
+0.1
-0.2
stress
Paraquat dichloride 0.015 mg/ml
-3.9
-4.1
+0.5
-0.1
+0.0
temperature
Glucose defined 30C timecourse1 timepoint 3
-2.7
-2.3
+0.0
-1.7
-0.1
stress
Def Neomycin 0.0008 mg/ml
-1.6
-2.6
-0.2
-2.3
+0.1
carbon source
L-tyrosine (C)
+0.6
-4.4
-0.8
-1.5
+0.2
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-3.4
-4.1
+0.2
+1.4
+0.2
RCH2 grown on a colony of 8R2A
-4.2
-2.7
+0.1
+1.1
+0.0
stress
Paraquat dichloride 0.015 mg/ml
-3.6
-1.6
-0.2
-0.3
+0.3
stress
Def Chloride 400 mM
-4.3
-3.7
-0.2
+3.1
-0.1
stress
Def Benzethonium chloride 0.008 mM
-3.3
-2.5
+0.2
+0.7
+0.1
stress
Def Chlorate 20 mM
-2.3
-3.0
-0.7
+1.8
+0.2
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-2.9
-2.8
-0.2
+1.8
+0.1
stress
Def Chlorate 40 mM
-3.0
-2.5
-0.1
+1.7
+0.1
nitrogen source
nitrite (N)
-2.2
-3.0
+0.1
+1.4
-0.1
carbon source
RCH2 defined media
-2.8
-1.8
-0.1
+1.2
+0.2
nitrogen source
Adenine (N)
-2.8
-2.7
-0.3
+2.5
+0.1
nitrogen source
nitrate (N)
-2.5
-2.1
-0.2
+1.8
-0.1
stress
Def Dimethyl Sulfoxide 5 vol%
-1.8
-2.7
+0.2
+1.3
-0.0
carbon source
RCH2 defined media
-2.6
-2.8
+0.2
+2.1
-0.0
stress
Def methylglyoxal 0.01 vol%
-2.2
-2.3
-0.1
+1.8
-0.1
nitrogen source
L-Alanine (N)
-2.1
-2.3
+0.1
+1.7
-0.2
nitrogen source
L-Alanine (N)
-1.2
-2.7
-0.1
+2.3
-0.2
nitrogen source
L-Alanine (N)
-3.3
-2.4
-0.0
+4.2
-0.1
stress
D-Cycloserine 0.032 mg/ml
-1.6
-1.6
-0.6
+2.6
-0.1
nitrogen source
nitrite (N)
-1.6
-2.2
+0.1
+3.1
-0.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
-2.3
-1.4
+0.0
+3.2
+0.3
carbon source
butyrate (C)
-1.4
-0.5
-0.3
+2.7
+3.6
stress
Furfuryl Alcohol 0.05 vol%
+1.2
+1.6
+0.2
+4.0
+0.1
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