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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4205 and Psest_4206 are separated by 72 nucleotides
Psest_4206 and Psest_4207 are separated by 120 nucleotides
Psest_4207 and Psest_4208 are separated by 88 nucleotides
Psest_4208 and Psest_4209 are separated by 153 nucleotides
Psest_4205: Psest_4205 - NAD/NADP transhydrogenase beta subunit, at 4,382,926 to 4,384,362
_4205
Psest_4206: Psest_4206 - Putative NADPH-quinone reductase (modulator of drug activity B), at 4,384,435 to 4,385,025
_4206
Psest_4207: Psest_4207 - Predicted Na+-dependent transporter, at 4,385,146 to 4,386,135
_4207
Psest_4208: Psest_4208 - AraC-type DNA-binding domain-containing proteins, at 4,386,224 to 4,387,024
_4208
Psest_4209: Psest_4209 - Uncharacterized conserved small protein, at 4,387,178 to 4,387,378
_4209
Group
Condition
Psest
_4205
Psest
_4206
Psest
_4207
Psest
_4208
Psest
_4209
RCH2 grown on a colony of Serratia
-0.4
+0.7
-0.5
-0.6
-4.4
stress
perchlorate 12.5 mM
-0.2
-0.3
-0.2
-0.3
-1.1
stress
sodium fluoride 8.5 mM
-0.3
-0.0
-0.3
-0.2
-1.2
RCH2 grown on a colony of 8R2A
+0.1
-0.6
-0.1
-0.1
-1.3
lb
LB
+0.1
-0.4
+0.1
-0.5
-0.9
stress
Def Chlorate 40 mM
-0.2
+0.2
+0.1
-0.0
-1.6
anaerobic
nitrate reduction - anaerobic
-0.0
-0.1
-0.2
+0.2
-1.3
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.2
-0.5
+0.4
-0.8
RCH2 grown on a colony of ecoli
+0.3
+0.2
-0.6
+0.0
-1.3
vitamin
No vitamins t2
+0.2
-0.1
+0.2
-0.3
-1.3
stress
Nalidixic 0.00390625 mg/ml
+0.5
-0.1
-0.2
-0.4
-0.8
nitrogen source
L-Isoleucine (N)
+0.3
-0.9
-0.3
-0.3
+0.3
RCH2 grown on a colony of Serratia
-0.2
+0.3
+0.3
-0.1
-1.1
stress
Thallium(I) acetate 0.1 mg/ml
-0.1
-0.2
-0.8
-0.3
+0.6
RCH2 grown on a colony of N2F3
-0.5
-0.2
+0.1
+0.6
-0.7
stress
Nalidixic 0.00390625 mg/ml
+0.3
+0.3
-0.3
+0.2
-0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
+0.4
-0.3
+0.2
-0.9
carbon source
propionate (C)
-0.3
-0.7
+0.4
+0.1
+0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.6
+0.3
-0.6
-0.3
+0.2
stress
Fusidic 0.016 mg/ml
+0.6
+0.4
+0.0
+0.3
-0.8
stress
Cephalothin 0.04 mg/ml
+0.8
+0.6
-0.6
+0.2
-0.4
stress
Carbenicillin 0.008 mg/ml
+0.3
-0.2
-0.1
-0.3
+1.2
RCH2 grown on a colony of ecoli
-0.3
-0.5
+0.1
+0.3
+1.3
stress
Furfuryl Alcohol 0.05 vol%
-0.1
-0.3
+0.9
-0.0
+0.7
nitrogen source
nitrite (N)
+1.0
+0.1
-0.1
-0.3
+0.6
RCH2 grown on a colony of N2F3
-0.3
+0.1
+0.7
+0.0
+0.8
stress
Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.3
+0.1
-0.2
+0.9
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.2
+0.2
+0.6
+0.2
+0.8
stress
Choline Lysine 20 mM
+0.1
+0.2
+0.1
+0.2
+1.4
stress
nitrate 250 mM
+0.4
+0.4
-0.1
-0.1
+2.1
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