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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4198 and Psest_4199 overlap by 4 nucleotides
Psest_4199 and Psest_4200 are separated by 3 nucleotides
Psest_4200 and Psest_4201 overlap by 1 nucleotides
Psest_4201 and Psest_4202 are separated by 156 nucleotides
Psest_4198: Psest_4198 - general secretion pathway protein I, at 4,376,634 to 4,377,053
_4198
Psest_4199: Psest_4199 - general secretion pathway protein H, at 4,377,050 to 4,377,619
_4199
Psest_4200: Psest_4200 - general secretion pathway protein G, at 4,377,623 to 4,378,063
_4200
Psest_4201: Psest_4201 - general secretion pathway protein F, at 4,378,063 to 4,379,277
_4201
Psest_4202: Psest_4202 - general secretory pathway protein E, at 4,379,434 to 4,380,948
_4202
Group
Condition
Psest
_4198
Psest
_4199
Psest
_4200
Psest
_4201
Psest
_4202
carbon source
L-Proline (C)
N.D.
-0.2
-0.5
-2.2
-0.5
stress
Paraquat dichloride 0.015 mg/ml
N.D.
+0.1
+0.1
-2.9
-0.6
stress
Nalidixic 0.00390625 mg/ml
N.D.
-0.2
-0.0
-3.3
+0.4
RCH2 grown on a colony of ecoli
N.D.
-1.1
+0.1
-1.7
-0.3
nitrogen source
nitrate (N)
N.D.
-0.4
-0.3
-1.6
-0.6
stress
Def Carbenicillin 0.02 mg/ml
N.D.
-0.4
+0.3
-3.0
+0.4
stress
Choline chloride 90 mM
N.D.
-0.1
-0.1
-2.3
-0.1
stress
Nalidixic 0.00390625 mg/ml
N.D.
-0.2
-0.0
-2.2
-0.1
stress
Paraquat dichloride 0.015 mg/ml
N.D.
-0.1
+0.2
-2.5
-0.3
stress
perchlorate 25 mM
N.D.
-0.4
+0.1
-2.3
+0.1
nitrogen source
Cytosine (N)
N.D.
-0.0
-0.2
-1.9
-0.3
nutrient
L-Histidine
N.D.
-0.4
-0.2
-1.5
-0.4
RCH2 grown on a colony of N2C3
N.D.
-0.3
-0.3
-1.3
-0.5
nitrogen source
L-Alanine (N)
N.D.
-0.4
-0.4
-1.2
-0.4
stress
Def methylglyoxal 0.01 vol%
N.D.
-0.7
-0.6
-0.9
-0.2
anaerobic
Nitrate/ lactate media with Nitrate 250mM
N.D.
+0.1
-0.2
-2.2
-0.0
RCH2 grown on a colony of N2F3
N.D.
+0.4
-0.0
-2.4
-0.2
stress
Cephalothin 0.04 mg/ml
N.D.
-1.0
-1.0
-0.4
+0.3
radiation
Ionizing radiation, 319.06 Gy,
N.D.
-0.3
+0.1
-1.9
-0.0
nitrogen source
Putrescine (N)
N.D.
+0.6
-0.0
-1.6
-0.6
stress
Dimethyl Sulfoxide 5 vol%
N.D.
-0.4
-0.1
-1.5
+0.6
temperature
LB 30C timecourse2 timepoint 2
N.D.
+0.3
+0.3
-2.0
+0.2
nitrogen source
nitrate (N)
N.D.
-0.5
-0.3
+0.8
-0.5
stress
2-Furfuraldehyde 0.05 vol%
N.D.
-0.1
+0.5
-1.1
+0.6
nitrogen source
nitrite (N)
N.D.
-0.4
-1.0
+2.7
+0.2
stress
Choline Lysine 20 mM
N.D.
+0.0
-0.1
+2.1
+0.1
stress
Nickel (II) chloride 1 mM
N.D.
+0.2
+0.0
+1.6
+0.4
stress
Benzethonium chloride 0.0125 mM
N.D.
+0.6
-0.0
+1.6
+0.4
stress
nitrite 2.5 mM
N.D.
+0.3
+0.4
+1.8
+0.2
carbon source
propionate (C)
N.D.
+1.2
+0.5
+0.9
+0.5
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