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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4182 and Psest_4183 are separated by 27 nucleotides
Psest_4183 and Psest_4184 are separated by 166 nucleotides
Psest_4184 and Psest_4185 are separated by 184 nucleotides
Psest_4185 and Psest_4186 are separated by 23 nucleotides
Psest_4182: Psest_4182 - Flagellar biosynthesis pathway, component FlhA, at 4,359,268 to 4,361,364
_4182
Psest_4183: Psest_4183 - PilZ domain., at 4,361,392 to 4,361,733
_4183
Psest_4184: Psest_4184 - hypothetical protein, at 4,361,900 to 4,362,106
_4184
Psest_4185: Psest_4185 - hypothetical protein, at 4,362,291 to 4,363,712
_4185
Psest_4186: Psest_4186 - Methylase of polypeptide chain release factors, at 4,363,736 to 4,364,683
_4186
Group
Condition
Psest
_4182
Psest
_4183
Psest
_4184
Psest
_4185
Psest
_4186
stress
Nalidixic 0.00390625 mg/ml
-0.5
-0.8
+0.1
-0.8
-0.7
stress
Furfuryl Alcohol 0.05 vol%
-0.1
-1.0
-0.1
-0.3
-0.7
carbon source
propionate (C)
-0.1
-1.1
-0.3
+0.2
-0.7
stress
Cisplatin 0.003 mg/ml
+0.2
-1.4
-0.4
+0.1
-0.4
stress
Nickel (II) chloride 1 mM
+0.1
-1.6
+0.3
-0.3
-0.4
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.3
-0.9
-0.9
-0.2
-0.1
nitrogen source
L-Citrulline (N)
-0.2
-1.1
+0.3
+0.1
-0.9
nutrient
L-tyrosine
+0.1
-1.7
+0.7
-0.1
-0.6
stress
Benzethonium chloride 0.0125 mM
+0.2
-1.9
+0.3
-0.4
+0.2
stress
Choline chloride 90 mM
-0.1
-1.6
+0.2
-0.2
+0.3
stress
Def A22 0.015 mg/ml
-0.0
+0.5
-0.9
+0.0
-0.8
stress
Nickel (II) chloride 0.9 mM
-0.3
-0.7
-0.5
-0.0
+0.8
lb
LB
+0.1
+0.7
-0.8
-0.1
-0.4
vitamin
No vitamins t2
-0.0
-1.5
+0.2
+0.1
+0.7
anaerobic
Nitrate/ lactate media with Nitrate 50mM
-0.2
-1.1
+0.9
+0.4
-0.0
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.2
+0.0
-1.2
+0.4
+0.7
stress
Def Vancomycin 0.016 mg/ml
-0.1
+0.7
-1.2
+0.0
+0.7
vitamin
No vitamins t1
+0.0
-1.0
+0.4
-0.0
+0.7
stress
Def Cephalothin 0.04 mg/ml
+0.2
+0.7
-1.1
-0.0
+0.7
stress
Def Cephalothin 0.08 mg/ml
+0.3
+0.9
-0.0
+0.1
-0.8
lb
LB
+0.1
+0.9
-0.7
+0.1
+0.4
nitrogen source
nitrate (N)
-0.1
+1.1
-0.5
+0.3
+0.3
carbon source
butyrate (C)
+0.4
+1.5
-0.2
+0.1
-0.5
carbon source
L-tyrosine (C)
-0.1
+0.9
+0.8
-0.3
-0.0
RCH2 grown on a colony of N2C3
+0.2
+1.1
+0.8
-0.1
-0.3
stress
nitrate 200 mM
-0.2
+1.0
+0.3
-0.2
+0.8
stress
Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.6
+0.5
+0.4
-0.1
stress
Cephalothin 0.04 mg/ml
+0.2
+1.4
-0.3
+0.1
+0.3
stress
Def Fusidic 0.032 mg/ml
-0.1
+1.5
+0.2
+0.0
+0.2
stress
Chlorate 75 mM
-0.1
+1.6
+0.1
+0.3
+0.4
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