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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4169 and Psest_4170 are separated by 3 nucleotides
Psest_4170 and Psest_4171 are separated by 1 nucleotides
Psest_4171 and Psest_4172 overlap by 29 nucleotides
Psest_4172 and Psest_4173 are separated by 20 nucleotides
Psest_4169: Psest_4169 - ATPase FliI/YscN family, at 4,347,386 to 4,348,720
_4169
Psest_4170: Psest_4170 - Flagellar biosynthesis/type III secretory pathway protein, at 4,348,724 to 4,349,422
_4170
Psest_4171: Psest_4171 - Flagellar motor switch protein, at 4,349,424 to 4,350,491
_4171
Psest_4172: Psest_4172 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 4,350,463 to 4,352,139
_4172
Psest_4173: Psest_4173 - flagellar hook-basal body complex protein FliE, at 4,352,160 to 4,352,480
_4173
Group
Condition
Psest
_4169
Psest
_4170
Psest
_4171
Psest
_4172
Psest
_4173
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
-1.5
-0.5
-1.2
N.D.
RCH2 grown on a colony of N2C3
+0.0
-2.9
-0.4
+0.4
N.D.
stress
Def Neomycin 0.0008 mg/ml
+0.1
-1.9
+0.0
-0.5
N.D.
lb
LB
-0.1
-1.8
-0.0
-0.2
N.D.
stress
Bacitracin 0.25 mg/ml
-0.2
-1.1
-0.3
-0.6
N.D.
temperature
LB 26C sample1
+0.2
-1.5
-0.1
-0.8
N.D.
stress
Chlorate 75 mM
-0.1
-1.4
-0.1
-0.5
N.D.
stress
Benzethonium chloride 0.0125 mM
+0.0
-1.6
-0.0
-0.2
N.D.
stress
nitrite 2.5 mM
-0.2
-1.3
-0.4
+0.2
N.D.
stress
Cobalt chloride 0.07 mM
-0.2
-1.5
-0.1
+0.2
N.D.
stress
Nickel (II) chloride 0.9 mM
-0.4
-1.7
+0.1
+0.6
N.D.
RCH2 grown on a colony of N2F3
-0.2
-1.7
+0.7
-0.1
N.D.
temperature
LB 30C timecourse2 timepoint 2
-0.1
-1.1
-0.4
+0.3
N.D.
stress
Def Vancomycin 0.016 mg/ml
+0.3
-1.0
+0.1
-0.4
N.D.
stress
Aluminum chloride 0.3 mM
-0.2
-1.3
-0.0
+0.5
N.D.
carbon source
propionate (C)
+0.5
-1.7
-0.0
+0.5
N.D.
vitamin
No vitamins t1
-0.0
-1.3
+0.0
+0.6
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.0
+1.5
-0.3
-1.1
N.D.
stress
Gentamicin 0.0016 mg/ml
+0.3
+0.7
-0.3
-0.5
N.D.
nitrogen source
nitrite (N)
+0.4
+1.1
-0.4
-0.6
N.D.
stress
Def Carbenicillin 0.02 mg/ml
+0.5
-1.2
+0.6
+0.9
N.D.
stress
2-Furfuraldehyde 0.05 vol%
+0.1
+1.2
+0.1
-0.5
N.D.
nitrogen source
nitrite (N)
+0.4
+1.1
-0.0
-0.5
N.D.
RCH2 grown on a colony of 8R2A
+0.2
+1.1
-0.4
+0.1
N.D.
stress
Cephalothin 0.04 mg/ml
+0.5
+1.5
-0.0
-0.4
N.D.
stress
Thallium(I) acetate 0.1 mg/ml
-0.1
+0.4
+0.4
+1.0
N.D.
nitrogen source
D-Alanine (N)
+0.3
+1.3
+0.1
+0.2
N.D.
nitrogen source
L-Alanine (N)
+0.4
+1.0
+0.3
+0.2
N.D.
stress
Lactate-nitrate; anaerobic; copper stress sample1
+0.3
+1.6
-0.0
+0.0
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-0.4
+2.2
+0.6
-0.0
N.D.
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