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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4165 and Psest_4166 are separated by 471 nucleotides
Psest_4166 and Psest_4167 overlap by 4 nucleotides
Psest_4167 and Psest_4168 are separated by 132 nucleotides
Psest_4168 and Psest_4169 overlap by 4 nucleotides
Psest_4165: Psest_4165 - Flagellar capping protein, at 4,344,382 to 4,345,650
_4165
Psest_4166: Psest_4166 - Flagellar biosynthesis/type III secretory pathway chaperone, at 4,346,122 to 4,346,562
_4166
Psest_4167: Psest_4167 - flagellar biosynthesis anti-sigma factor FlgM, at 4,346,559 to 4,346,834
_4167
Psest_4168: Psest_4168 - Flagellar FliJ protein., at 4,346,967 to 4,347,389
_4168
Psest_4169: Psest_4169 - ATPase FliI/YscN family, at 4,347,386 to 4,348,720
_4169
Group
Condition
Psest
_4165
Psest
_4166
Psest
_4167
Psest
_4168
Psest
_4169
stress
Def Cephalothin 0.08 mg/ml
-0.5
-0.7
N.D.
-0.5
-0.4
stress
Nalidixic 0.00390625 mg/ml
-0.1
-0.8
N.D.
-0.4
-0.3
RCH2 grown on a colony of N2C3
+0.2
+0.4
N.D.
-2.1
+0.0
stress
nitrite 2.5 mM
-0.1
-0.0
N.D.
-1.2
-0.0
stress
Furfuryl Alcohol 0.2 vol%
-0.2
-0.4
N.D.
-0.5
-0.3
nitrogen source
L-Glutamic (N)
+0.1
+0.1
N.D.
-1.1
-0.2
stress
Cobalt chloride 0.05 mM
-0.4
-0.4
N.D.
-0.5
+0.2
stress
Chlorate 75 mM
-0.4
-0.7
N.D.
+0.4
-0.1
lb
LB
+0.2
-0.4
N.D.
-0.5
-0.2
stress
Furfuryl Alcohol 0.05 vol%
+0.2
+0.3
N.D.
-0.8
-0.4
stress
L-Lysine 200 mM
+0.0
+0.5
N.D.
-0.7
-0.2
nitrogen source
nitrite (N)
-0.4
-0.7
N.D.
+0.5
+0.4
stress
1-ethyl-3-methylimidazolium acetate 40 mM
-0.4
+0.4
N.D.
+0.4
-0.2
stress
Cephalothin 0.04 mg/ml
-0.1
-0.5
N.D.
+0.6
+0.5
stress
Def Chlorate 40 mM
-0.5
+0.1
N.D.
+0.9
-0.1
RCH2 grown on a colony of 8R2A
+0.4
+0.5
N.D.
-0.6
+0.2
stress
Lactate-nitrate; anaerobic; uranyl acetate stress sample1
-0.3
+0.3
N.D.
+0.5
+0.3
stress
Carbenicillin 0.008 mg/ml
-0.3
+0.1
N.D.
+0.9
+0.1
RCH2 grown on a colony of ecoli
+0.4
-0.5
N.D.
+1.0
+0.0
carbon source
L-tyrosine (C)
-0.1
+0.2
N.D.
+1.2
-0.1
stress
Lactate-nitrate; anaerobic; cobalt stress sample2
+0.1
+0.5
N.D.
+0.5
+0.2
lb
LB
+0.4
+0.3
N.D.
+0.5
+0.1
nitrogen source
Putrescine (N)
+0.2
+0.4
N.D.
+0.5
+0.2
nitrogen source
L-Arginine (N)
+0.2
+0.4
N.D.
+0.5
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.0
+0.2
N.D.
+0.6
+0.6
RCH2 grown on a colony of Serratia
+0.4
+0.7
N.D.
+0.2
+0.1
nitrogen source
L-Glutamine (N)
+0.3
+0.4
N.D.
+0.5
+0.2
nitrogen source
L-Alanine (N)
+0.3
+0.4
N.D.
+0.4
+0.4
stress
Def Carbenicillin 0.02 mg/ml
+0.3
+0.7
N.D.
+0.3
+0.5
RCH2 grown on a colony of N2A2
+0.2
+0.6
N.D.
+1.1
+0.1
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