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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4142 and Psest_4143 are separated by 16 nucleotides
Psest_4143 and Psest_4144 are separated by 37 nucleotides
Psest_4144 and Psest_4145 overlap by 4 nucleotides
Psest_4145 and Psest_4146 are separated by 8 nucleotides
Psest_4142: Psest_4142 - hypothetical protein, at 4,325,340 to 4,326,377
_4142
Psest_4143: Psest_4143 - flagellar hook-associated protein 3, at 4,326,394 to 4,327,302
_4143
Psest_4144: Psest_4144 - flagellar hook-associated protein FlgK, at 4,327,340 to 4,328,719
_4144
Psest_4145: Psest_4145 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 4,328,716 to 4,329,828
_4145
Psest_4146: Psest_4146 - Flagellar basal-body P-ring protein, at 4,329,837 to 4,330,949
_4146
Group
Condition
Psest
_4142
Psest
_4143
Psest
_4144
Psest
_4145
Psest
_4146
stress
Def Cephalothin 0.08 mg/ml
-2.8
-0.1
-0.2
-1.7
-0.6
temperature
LB 30C timecourse2 timepoint 1
-3.8
-0.0
-0.2
+0.2
-0.1
RCH2 grown on a colony of N2C3
-1.9
-0.4
-0.4
-1.1
+0.1
temperature
LB 26C sample1
-2.3
+0.1
-0.2
-0.6
-0.6
nutrient
L-tyrosine
-2.6
+0.0
+0.2
-0.5
-0.6
stress
Cobalt chloride 0.07 mM
-1.9
-0.2
-0.7
-0.6
-0.0
stress
Choline chloride 90 mM
-3.3
+0.5
+0.2
-0.0
-0.5
stress
Thallium(I) acetate 0.1 mg/ml
-2.5
-0.4
+0.2
-0.7
+0.2
stress
Furfuryl Alcohol 0.05 vol%
-2.8
-0.8
-0.3
+1.1
-0.3
stress
nitrite 2.5 mM
-1.6
-0.2
-0.1
-0.9
-0.2
stress
Vanillin 2 mM
-2.2
-0.4
+0.5
-0.3
-0.1
stress
Def Cephalothin 0.04 mg/ml
-1.9
+0.1
+0.1
-0.9
+0.1
stress
Nalidixic 0.00390625 mg/ml
-1.7
-0.2
-0.4
+0.2
-0.4
stress
Nickel (II) chloride 1 mM
-2.3
+0.3
-0.3
-0.1
-0.0
radiation
Ionizing radiation, 319.06 Gy,
-2.3
+0.2
-0.5
+0.8
-0.3
vitamin
With vitamins t2
-1.8
-0.1
-0.2
-0.4
+0.4
RCH2 grown on a colony of 8R2A
-0.9
+0.4
-0.6
-0.5
-0.6
RCH2 grown on a colony of Serratia
-3.1
-0.2
+0.3
+0.2
+0.7
stress
Fusidic 0.016 mg/ml
-1.7
+0.1
-0.4
+0.6
-0.7
RCH2 grown on a colony of N2A2
-2.2
-0.0
+0.4
-0.7
+0.5
stress
Thallium(I) acetate 0.08 mg/ml
-1.6
-0.6
-0.1
+0.5
-0.2
stress
Carbenicillin 0.008 mg/ml
-2.6
+0.1
+0.1
+0.2
+0.4
stress
Carbenicillin 0.008 mg/ml
-1.1
+0.2
+0.4
-1.1
+0.1
stress
nitrate 200 mM
-2.5
+0.0
-0.3
+1.0
+0.4
stress
Def A22 0.015 mg/ml
+1.0
-0.3
-0.4
-1.0
-0.4
stress
Bacitracin 0.25 mg/ml
-1.7
-0.2
-0.1
+0.8
+0.3
stress
Def Thallium(I) acetate 0.125 mg/ml
-2.1
+0.2
+0.3
+0.5
+0.7
nitrogen source
L-Isoleucine (N)
+2.2
-0.1
-0.2
-0.2
-0.3
stress
Cephalothin 0.04 mg/ml
+2.2
+0.4
-0.1
-0.7
+0.0
RCH2 grown on a colony of N2F3
+2.1
+0.3
-0.3
-0.2
+0.5
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