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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_4138 and Psest_4139 overlap by 38 nucleotides
Psest_4139 and Psest_4140 overlap by 4 nucleotides
Psest_4140 and Psest_4141 are separated by 122 nucleotides
Psest_4141 and Psest_4142 are separated by 11 nucleotides
Psest_4138: Psest_4138 - hypothetical protein, at 4,319,888 to 4,320,109
_4138
Psest_4139: Psest_4139 - PAS domain S-box, at 4,320,072 to 4,322,858
_4139
Psest_4140: Psest_4140 - Acyl-CoA dehydrogenases, at 4,322,855 to 4,324,012
_4140
Psest_4141: Psest_4141 - 3-carboxymuconate cyclase, at 4,324,135 to 4,325,328
_4141
Psest_4142: Psest_4142 - hypothetical protein, at 4,325,340 to 4,326,377
_4142
Group
Condition
Psest
_4138
Psest
_4139
Psest
_4140
Psest
_4141
Psest
_4142
temperature
LB 30C timecourse2 timepoint 1
N.D.
-0.1
-0.1
+0.3
-3.8
stress
Furfuryl Alcohol 0.05 vol%
N.D.
-0.5
-0.0
-0.4
-2.8
stress
Def Cephalothin 0.08 mg/ml
N.D.
-0.5
-0.1
-0.2
-2.8
stress
Vanillin 2 mM
N.D.
-0.4
-0.2
-0.6
-2.2
stress
Choline chloride 90 mM
N.D.
+0.2
-0.1
-0.0
-3.3
RCH2 grown on a colony of Serratia
N.D.
-0.1
+0.1
+0.1
-3.1
stress
Carbenicillin 0.008 mg/ml
N.D.
-0.2
-0.1
-0.1
-2.6
nutrient
L-tyrosine
N.D.
-0.1
+0.3
-0.3
-2.6
nitrogen source
L-Isoleucine (N)
N.D.
-0.4
-0.5
-0.3
-1.5
stress
Thallium(I) acetate 0.1 mg/ml
N.D.
-0.1
-0.2
+0.3
-2.5
stress
nitrate 200 mM
N.D.
+0.1
+0.2
+0.0
-2.5
stress
Nickel (II) chloride 1 mM
N.D.
+0.1
+0.3
+0.1
-2.3
stress
methylglyoxal 0.0016 vol%
N.D.
+0.0
+0.4
-0.6
-1.6
temperature
LB 30C timecourse1 timepoint 2
N.D.
+0.1
+0.0
+0.3
-2.3
RCH2 grown on a colony of N2C3
N.D.
-0.5
-0.0
+0.6
-1.9
radiation
Ionizing radiation, 319.06 Gy,
N.D.
+0.1
+0.2
+0.5
-2.3
stress
Cobalt chloride 0.07 mM
N.D.
+0.2
+0.3
+0.3
-1.9
nitrogen source
nitrite (N)
N.D.
+0.4
+0.5
-0.6
-1.3
nitrogen source
Parabanic Acid (N)
N.D.
+0.4
+0.6
-0.6
-1.2
carbon source
L-Lactate (C)
N.D.
+0.6
+0.6
-0.6
-1.1
stress
Def Thallium(I) acetate 0.125 mg/ml
N.D.
+0.9
+0.7
+0.3
-2.1
carbon source
propionate (C)
N.D.
-0.4
+0.1
+2.2
-1.0
carbon source
butyrate (C)
N.D.
+1.0
+0.9
-0.8
+0.2
nitrogen source
L-Isoleucine (N)
N.D.
-0.5
+0.2
-0.6
+2.2
carbon source
butyrate (C)
N.D.
+0.9
+0.9
-1.0
+0.6
carbon source
butyrate (C)
N.D.
+0.9
+0.9
-0.7
+0.4
stress
Choline Lysine 20 mM
N.D.
+0.6
+0.7
-0.5
+0.9
carbon source
Glycolic Acid (C)
N.D.
+0.7
+0.9
-0.6
+0.9
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
+0.2
+0.7
+0.8
+1.2
stress
Cephalothin 0.04 mg/ml
N.D.
+0.2
+0.4
+1.5
+2.2
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