Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4138 and Psest_4139 overlap by 38 nucleotidesPsest_4139 and Psest_4140 overlap by 4 nucleotidesPsest_4140 and Psest_4141 are separated by 122 nucleotidesPsest_4141 and Psest_4142 are separated by 11 nucleotides Psest_4138: Psest_4138 - hypothetical protein, at 4,319,888 to 4,320,109 _4138 Psest_4139: Psest_4139 - PAS domain S-box, at 4,320,072 to 4,322,858 _4139 Psest_4140: Psest_4140 - Acyl-CoA dehydrogenases, at 4,322,855 to 4,324,012 _4140 Psest_4141: Psest_4141 - 3-carboxymuconate cyclase, at 4,324,135 to 4,325,328 _4141 Psest_4142: Psest_4142 - hypothetical protein, at 4,325,340 to 4,326,377 _4142
Group Condition Psest_4138 Psest_4139 Psest_4140 Psest_4141 Psest_4142
temperature LB 30C timecourse2 timepoint 1 N.D. -0.1 -0.1 +0.3 -3.8
stress Furfuryl Alcohol 0.05 vol% N.D. -0.5 -0.0 -0.4 -2.8
stress Def Cephalothin 0.08 mg/ml N.D. -0.5 -0.1 -0.2 -2.8
stress Vanillin 2 mM N.D. -0.4 -0.2 -0.6 -2.2
stress Choline chloride 90 mM N.D. +0.2 -0.1 -0.0 -3.3
RCH2 grown on a colony of Serratia N.D. -0.1 +0.1 +0.1 -3.1
stress Carbenicillin 0.008 mg/ml N.D. -0.2 -0.1 -0.1 -2.6
nutrient L-tyrosine N.D. -0.1 +0.3 -0.3 -2.6
nitrogen source L-Isoleucine (N) N.D. -0.4 -0.5 -0.3 -1.5
stress Thallium(I) acetate 0.1 mg/ml N.D. -0.1 -0.2 +0.3 -2.5
stress nitrate 200 mM N.D. +0.1 +0.2 +0.0 -2.5
stress Nickel (II) chloride 1 mM N.D. +0.1 +0.3 +0.1 -2.3
stress methylglyoxal 0.0016 vol% N.D. +0.0 +0.4 -0.6 -1.6
temperature LB 30C timecourse1 timepoint 2 N.D. +0.1 +0.0 +0.3 -2.3
RCH2 grown on a colony of N2C3 N.D. -0.5 -0.0 +0.6 -1.9
radiation Ionizing radiation, 319.06 Gy, N.D. +0.1 +0.2 +0.5 -2.3
stress Cobalt chloride 0.07 mM N.D. +0.2 +0.3 +0.3 -1.9
nitrogen source nitrite (N) N.D. +0.4 +0.5 -0.6 -1.3
nitrogen source Parabanic Acid (N) N.D. +0.4 +0.6 -0.6 -1.2
carbon source L-Lactate (C) N.D. +0.6 +0.6 -0.6 -1.1
stress Def Thallium(I) acetate 0.125 mg/ml N.D. +0.9 +0.7 +0.3 -2.1
carbon source propionate (C) N.D. -0.4 +0.1 +2.2 -1.0
carbon source butyrate (C) N.D. +1.0 +0.9 -0.8 +0.2
nitrogen source L-Isoleucine (N) N.D. -0.5 +0.2 -0.6 +2.2
carbon source butyrate (C) N.D. +0.9 +0.9 -1.0 +0.6
carbon source butyrate (C) N.D. +0.9 +0.9 -0.7 +0.4
stress Choline Lysine 20 mM N.D. +0.6 +0.7 -0.5 +0.9
carbon source Glycolic Acid (C) N.D. +0.7 +0.9 -0.6 +0.9
stress Def 2-Furfuraldehyde 0.032 vol% N.D. +0.2 +0.7 +0.8 +1.2
stress Cephalothin 0.04 mg/ml N.D. +0.2 +0.4 +1.5 +2.2
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