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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4135 and Psest_4136 are separated by 292 nucleotides
Psest_4136 and Psest_4137 overlap by 1 nucleotides
Psest_4137 and Psest_4138 overlap by 4 nucleotides
Psest_4138 and Psest_4139 overlap by 38 nucleotides
Psest_4135: Psest_4135 - Ketosteroid isomerase homolog, at 4,315,800 to 4,316,258
_4135
Psest_4136: Psest_4136 - TonB-dependent siderophore receptor, at 4,316,551 to 4,318,764
_4136
Psest_4137: Psest_4137 - Uncharacterized iron-regulated membrane protein, at 4,318,764 to 4,319,891
_4137
Psest_4138: Psest_4138 - hypothetical protein, at 4,319,888 to 4,320,109
_4138
Psest_4139: Psest_4139 - PAS domain S-box, at 4,320,072 to 4,322,858
_4139
Group
Condition
Psest
_4135
Psest
_4136
Psest
_4137
Psest
_4138
Psest
_4139
nitrogen source
L-Isoleucine (N)
-0.5
-0.3
-1.0
N.D.
-0.5
nitrogen source
nitrite (N)
-1.2
-0.5
-0.5
N.D.
+0.1
RCH2 grown on a colony of N2F3
-1.2
-0.2
-0.2
N.D.
-0.2
stress
nitrate 250 mM
-1.1
-0.2
-0.2
N.D.
-0.1
stress
Def Phosphomycin 0.125 mg/ml
-0.2
-0.3
-0.5
N.D.
-0.6
stress
A22 0.005 mg/ml
-0.9
-0.1
-0.1
N.D.
-0.3
carbon source
D-Gluconic Acid (C)
-0.3
+0.0
-0.9
N.D.
-0.3
stress
Spectinomycin 0.00625 mg/ml
-0.6
-0.0
-0.8
N.D.
+0.0
lb
LB
-0.3
-0.3
-0.6
N.D.
+0.1
stress
Fusidic 0.016 mg/ml
-0.5
+0.1
-0.5
N.D.
+0.1
carbon source
L-Alanine (C)
+0.3
-0.0
-0.7
N.D.
-0.4
lb
LB
-0.6
-0.1
+0.2
N.D.
-0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.8
-0.3
+0.4
N.D.
-0.0
stress
Lactate-nitrate; anaerobic; cobalt stress sample2
-1.0
+0.1
+0.1
N.D.
+0.2
stress
sodium fluoride 6.25 mM
+0.4
-0.2
-0.4
N.D.
-0.3
RCH2 grown on a colony of ecoli
+0.5
+0.1
-1.1
N.D.
+0.1
stress
Def Benzethonium chloride 0.008 mM
-0.8
-0.2
+0.4
N.D.
+0.2
RCH2 grown on a colony of Serratia
-0.9
+0.1
+0.7
N.D.
-0.2
stress
Gentamicin 0.0016 mg/ml
-0.3
-0.2
+0.5
N.D.
+0.2
anaerobic
Nitrate/ lactate media with Nitrate 50mM
+0.9
-0.1
-0.3
N.D.
-0.1
RCH2 grown on a colony of N2A2
-0.6
+0.2
+0.6
N.D.
+0.2
temperature
LB 30C timecourse2 timepoint 2
-0.3
-0.1
+0.8
N.D.
+0.1
carbon source
butyrate (C)
-0.3
-0.3
+0.3
N.D.
+1.0
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.1
-0.1
+0.6
N.D.
+0.4
carbon source
L-tyrosine (C)
+0.4
+0.2
-0.2
N.D.
+0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.1
-0.3
+1.0
N.D.
+0.2
stress
Def Carbenicillin 0.02 mg/ml
+0.5
-0.0
+0.4
N.D.
+0.4
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.3
+0.3
+0.0
N.D.
+0.9
stress
Benzalkonium Chloride 0.002 mg/ml
+0.3
+0.3
+0.5
N.D.
+0.4
stress
Def Chlorate 40 mM
+0.7
+0.1
+0.8
N.D.
-0.1
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