Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4135 and Psest_4136 are separated by 292 nucleotidesPsest_4136 and Psest_4137 overlap by 1 nucleotidesPsest_4137 and Psest_4138 overlap by 4 nucleotidesPsest_4138 and Psest_4139 overlap by 38 nucleotides Psest_4135: Psest_4135 - Ketosteroid isomerase homolog, at 4,315,800 to 4,316,258 _4135 Psest_4136: Psest_4136 - TonB-dependent siderophore receptor, at 4,316,551 to 4,318,764 _4136 Psest_4137: Psest_4137 - Uncharacterized iron-regulated membrane protein, at 4,318,764 to 4,319,891 _4137 Psest_4138: Psest_4138 - hypothetical protein, at 4,319,888 to 4,320,109 _4138 Psest_4139: Psest_4139 - PAS domain S-box, at 4,320,072 to 4,322,858 _4139
Group Condition Psest_4135 Psest_4136 Psest_4137 Psest_4138 Psest_4139
nitrogen source L-Isoleucine (N) -0.5 -0.3 -1.0 N.D. -0.5
nitrogen source nitrite (N) -1.2 -0.5 -0.5 N.D. +0.1
RCH2 grown on a colony of N2F3 -1.2 -0.2 -0.2 N.D. -0.2
stress nitrate 250 mM -1.1 -0.2 -0.2 N.D. -0.1
stress Def Phosphomycin 0.125 mg/ml -0.2 -0.3 -0.5 N.D. -0.6
stress A22 0.005 mg/ml -0.9 -0.1 -0.1 N.D. -0.3
carbon source D-Gluconic Acid (C) -0.3 +0.0 -0.9 N.D. -0.3
stress Spectinomycin 0.00625 mg/ml -0.6 -0.0 -0.8 N.D. +0.0
lb LB -0.3 -0.3 -0.6 N.D. +0.1
stress Fusidic 0.016 mg/ml -0.5 +0.1 -0.5 N.D. +0.1
carbon source L-Alanine (C) +0.3 -0.0 -0.7 N.D. -0.4
lb LB -0.6 -0.1 +0.2 N.D. -0.2
RCH2 grown on a colony of Pseudomonas migulae strain N1B4 -0.8 -0.3 +0.4 N.D. -0.0
stress Lactate-nitrate; anaerobic; cobalt stress sample2 -1.0 +0.1 +0.1 N.D. +0.2
stress sodium fluoride 6.25 mM +0.4 -0.2 -0.4 N.D. -0.3
RCH2 grown on a colony of ecoli +0.5 +0.1 -1.1 N.D. +0.1
stress Def Benzethonium chloride 0.008 mM -0.8 -0.2 +0.4 N.D. +0.2
RCH2 grown on a colony of Serratia -0.9 +0.1 +0.7 N.D. -0.2
stress Gentamicin 0.0016 mg/ml -0.3 -0.2 +0.5 N.D. +0.2
anaerobic Nitrate/ lactate media with Nitrate 50mM +0.9 -0.1 -0.3 N.D. -0.1
RCH2 grown on a colony of N2A2 -0.6 +0.2 +0.6 N.D. +0.2
temperature LB 30C timecourse2 timepoint 2 -0.3 -0.1 +0.8 N.D. +0.1
carbon source butyrate (C) -0.3 -0.3 +0.3 N.D. +1.0
stress Def Polymyxin B sulfate 0.0001 mg/ml -0.1 -0.1 +0.6 N.D. +0.4
carbon source L-tyrosine (C) +0.4 +0.2 -0.2 N.D. +0.6
stress Def 2-Furfuraldehyde 0.032 vol% +0.1 -0.3 +1.0 N.D. +0.2
stress Def Carbenicillin 0.02 mg/ml +0.5 -0.0 +0.4 N.D. +0.4
stress Def Thallium(I) acetate 0.125 mg/ml +0.3 +0.3 +0.0 N.D. +0.9
stress Benzalkonium Chloride 0.002 mg/ml +0.3 +0.3 +0.5 N.D. +0.4
stress Def Chlorate 40 mM +0.7 +0.1 +0.8 N.D. -0.1
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