Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4128 and Psest_4129 are separated by 14 nucleotidesPsest_4129 and Psest_4130 are separated by 292 nucleotidesPsest_4130 and Psest_4131 are separated by 205 nucleotidesPsest_4131 and Psest_4132 are separated by 31 nucleotides Psest_4128: Psest_4128 - Universal stress protein UspA and related nucleotide-binding proteins, at 4,306,591 to 4,307,442 _4128 Psest_4129: Psest_4129 - Sulfate permease and related transporters (MFS superfamily), at 4,307,457 to 4,308,944 _4129 Psest_4130: Psest_4130 - uncharacterized domain HDIG, at 4,309,237 to 4,310,451 _4130 Psest_4131: Psest_4131 - alpha-ketoglutarate sensor protein (mifS) (from data), at 4,310,657 to 4,312,420 _4131 Psest_4132: Psest_4132 - alpha-ketoglutarate DNA-binding response regulator (mifR) (from data), at 4,312,452 to 4,313,795 _4132
Group Condition Psest_4128 Psest_4129 Psest_4130 Psest_4131 Psest_4132
carbon source a-Ketoglutaric (C) +0.5 -0.0 -0.1 -4.8 -5.1
carbon source a-Ketoglutaric (C) -0.5 -0.1 -0.1 -5.1 -3.5
stress nitrate 250 mM -1.5 -0.8 -0.0 -0.2 -0.8
stress Paraquat dichloride 0.015 mg/ml -1.1 -0.6 -0.2 -0.6 -0.8
stress Paraquat dichloride 0.015 mg/ml -1.4 +0.2 -0.1 -0.7 -0.8
stress Def Benzethonium chloride 0.008 mM -0.9 -0.4 -0.1 -0.8 -0.7
stress Benzethonium chloride 0.01 mM -2.8 +0.0 -0.1 -0.1 +0.2
stress Vancomycin 0.016 mg/ml -2.2 +0.2 -0.2 +0.1 -0.5
RCH2 grown on a colony of N2F3 -2.1 -0.1 -0.1 -0.7 +0.4
vitamin No vitamins t1 -1.7 -0.4 +0.1 -0.0 -0.5
stress Nickel (II) chloride 0.8 mM -2.3 -0.0 -0.0 -0.2 +0.1
stress syringaldehyde 3 mM -2.5 -0.3 +0.1 -0.1 +0.5
stress Doxycycline hyclate 0.0002 mg/ml -2.1 -0.1 +0.0 +0.1 -0.2
stress Benzethonium chloride 0.0125 mM -2.4 +0.2 +0.1 +0.3 -0.5
vitamin No vitamins t2 -1.6 -0.2 +0.0 +0.2 -0.8
stress Polymyxin B sulfate 0.0001 mg/ml -0.5 +0.2 -0.4 -0.6 -0.9
stress nitrate 200 mM -2.8 -0.0 -0.0 +0.7 +0.0
nitrogen source nitrite (N) -2.0 -0.1 -0.2 +0.4 -0.2
stress Def Carbenicillin 0.02 mg/ml -2.4 +0.4 +0.1 +0.1 -0.2
stress Carbenicillin 0.008 mg/ml -1.3 +0.3 -0.4 -0.6 +0.1
stress acetate 80 mM -2.4 -0.1 +0.0 +0.3 +0.3
RCH2 grown on a colony of N2C3 -2.7 -0.2 -0.1 +0.0 +1.2
stress Lactate-nitrate; anaerobic sample2 -1.9 +0.2 +0.0 +0.2 -0.2
stress Nalidixic 0.00390625 mg/ml -0.8 +0.3 +0.2 -0.1 -1.3
carbon source propionate (C) -1.8 +0.3 -0.2 -0.3 +0.4
stress Zinc 0.12 mM -2.2 +0.4 +0.0 +0.1 +0.2
stress Vanillin 2 mM -2.0 +0.0 +0.0 +0.7 -0.1
nitrogen source L-Valine (N) +1.6 -0.2 -0.1 +0.2 -0.7
stress Def 2-Furfuraldehyde 0.032 vol% +1.4 -0.4 +0.1 +0.4 +0.4
stress methylglyoxal 0.0016 vol% +1.0 -0.4 +0.0 +0.3 +0.9
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