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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4128 and Psest_4129 are separated by 14 nucleotides
Psest_4129 and Psest_4130 are separated by 292 nucleotides
Psest_4130 and Psest_4131 are separated by 205 nucleotides
Psest_4131 and Psest_4132 are separated by 31 nucleotides
Psest_4128: Psest_4128 - Universal stress protein UspA and related nucleotide-binding proteins, at 4,306,591 to 4,307,442
_4128
Psest_4129: Psest_4129 - Sulfate permease and related transporters (MFS superfamily), at 4,307,457 to 4,308,944
_4129
Psest_4130: Psest_4130 - uncharacterized domain HDIG, at 4,309,237 to 4,310,451
_4130
Psest_4131: Psest_4131 - alpha-ketoglutarate sensor protein (mifS)
(from data)
, at 4,310,657 to 4,312,420
_4131
Psest_4132: Psest_4132 - alpha-ketoglutarate DNA-binding response regulator (mifR)
(from data)
, at 4,312,452 to 4,313,795
_4132
Group
Condition
Psest
_4128
Psest
_4129
Psest
_4130
Psest
_4131
Psest
_4132
carbon source
a-Ketoglutaric (C)
+0.5
-0.0
-0.1
-4.8
-5.1
carbon source
a-Ketoglutaric (C)
-0.5
-0.1
-0.1
-5.1
-3.5
stress
nitrate 250 mM
-1.5
-0.8
-0.0
-0.2
-0.8
stress
Paraquat dichloride 0.015 mg/ml
-1.1
-0.6
-0.2
-0.6
-0.8
stress
Paraquat dichloride 0.015 mg/ml
-1.4
+0.2
-0.1
-0.7
-0.8
stress
Def Benzethonium chloride 0.008 mM
-0.9
-0.4
-0.1
-0.8
-0.7
stress
Benzethonium chloride 0.01 mM
-2.8
+0.0
-0.1
-0.1
+0.2
stress
Vancomycin 0.016 mg/ml
-2.2
+0.2
-0.2
+0.1
-0.5
RCH2 grown on a colony of N2F3
-2.1
-0.1
-0.1
-0.7
+0.4
vitamin
No vitamins t1
-1.7
-0.4
+0.1
-0.0
-0.5
stress
Nickel (II) chloride 0.8 mM
-2.3
-0.0
-0.0
-0.2
+0.1
stress
syringaldehyde 3 mM
-2.5
-0.3
+0.1
-0.1
+0.5
stress
Doxycycline hyclate 0.0002 mg/ml
-2.1
-0.1
+0.0
+0.1
-0.2
stress
Benzethonium chloride 0.0125 mM
-2.4
+0.2
+0.1
+0.3
-0.5
vitamin
No vitamins t2
-1.6
-0.2
+0.0
+0.2
-0.8
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
+0.2
-0.4
-0.6
-0.9
stress
nitrate 200 mM
-2.8
-0.0
-0.0
+0.7
+0.0
nitrogen source
nitrite (N)
-2.0
-0.1
-0.2
+0.4
-0.2
stress
Def Carbenicillin 0.02 mg/ml
-2.4
+0.4
+0.1
+0.1
-0.2
stress
Carbenicillin 0.008 mg/ml
-1.3
+0.3
-0.4
-0.6
+0.1
stress
acetate 80 mM
-2.4
-0.1
+0.0
+0.3
+0.3
RCH2 grown on a colony of N2C3
-2.7
-0.2
-0.1
+0.0
+1.2
stress
Lactate-nitrate; anaerobic sample2
-1.9
+0.2
+0.0
+0.2
-0.2
stress
Nalidixic 0.00390625 mg/ml
-0.8
+0.3
+0.2
-0.1
-1.3
carbon source
propionate (C)
-1.8
+0.3
-0.2
-0.3
+0.4
stress
Zinc 0.12 mM
-2.2
+0.4
+0.0
+0.1
+0.2
stress
Vanillin 2 mM
-2.0
+0.0
+0.0
+0.7
-0.1
nitrogen source
L-Valine (N)
+1.6
-0.2
-0.1
+0.2
-0.7
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.4
-0.4
+0.1
+0.4
+0.4
stress
methylglyoxal 0.0016 vol%
+1.0
-0.4
+0.0
+0.3
+0.9
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