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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0403 and Psest_0404 overlap by 4 nucleotides
Psest_0404 and Psest_0405 overlap by 4 nucleotides
Psest_0405 and Psest_0406 overlap by 41 nucleotides
Psest_0406 and Psest_0407 are separated by 83 nucleotides
Psest_0403: Psest_0403 - lycopene cyclase, at 438,067 to 439,236
_0403
Psest_0404: Psest_0404 - phytoene desaturase, at 439,233 to 440,738
_0404
Psest_0405: Psest_0405 - Phytoene/squalene synthetase, at 440,735 to 441,661
_0405
Psest_0406: Psest_0406 - Fatty acid hydroxylase superfamily., at 441,621 to 442,154
_0406
Psest_0407: Psest_0407 - Dioxygenases related to 2-nitropropane dioxygenase, at 442,238 to 443,281
_0407
Group
Condition
Psest
_0403
Psest
_0404
Psest
_0405
Psest
_0406
Psest
_0407
stress
Def Carbenicillin 0.02 mg/ml
-0.2
-0.4
-0.2
-0.2
-1.7
stress
Def Phosphomycin 0.125 mg/ml
-0.7
-0.4
-0.7
-0.7
+0.2
stress
Def Carbenicillin 0.008 mg/ml
-0.5
-0.5
-0.9
-0.8
+0.6
nitrogen source
L-Alanine (N)
-0.4
-0.2
-0.4
-0.2
-0.4
stress
Def A22 0.015 mg/ml
-0.3
-0.2
-0.3
-0.4
-0.5
stress
Furfuryl Alcohol 0.05 vol%
-0.4
+0.1
-0.4
+0.3
-1.2
nitrogen source
L-Isoleucine (N)
-0.2
-0.4
-0.7
-0.7
+0.5
RCH2 grown on a colony of 8R2A
-0.4
+0.3
-0.4
-0.4
-0.3
nitrogen source
Cytosine (N)
-0.5
-0.2
-0.5
-0.3
+0.3
nitrogen source
nitrite (N)
-0.5
-0.3
-0.1
-0.3
+0.3
RCH2 grown on a colony of N2C3
-0.8
+0.1
+0.5
-0.2
-0.4
stress
Carbenicillin 0.0065 mg/ml
-0.1
-0.2
-0.4
-0.3
+0.4
nitrogen source
L-Citrulline (N)
-0.2
+0.2
-0.2
+0.4
-0.5
vitamin
With vitamins t1
+0.3
-0.1
-0.3
-0.5
+0.3
carbon source
butyrate (C)
-0.5
-0.1
-0.2
-0.0
+0.8
stress
Spectinomycin 0.00625 mg/ml
-0.2
-0.2
+0.5
+0.2
-0.3
stress
Def sodium fluoride 25 mM
+0.2
-0.1
+0.4
+0.0
-0.6
nitrogen source
D-Alanine (N)
-0.1
+0.3
+0.3
+0.1
-0.5
stress
Cobalt chloride 0.08 mM
-0.3
+0.2
-0.2
+0.1
+0.5
stress
Cephalothin 0.04 mg/ml
-0.2
+0.2
-0.4
+0.0
+0.6
RCH2 grown on a colony of N2A2
-0.1
-0.2
-0.3
+0.3
+0.6
stress
Polymyxin B sulfate 0.0001 mg/ml
+0.1
+0.4
+0.2
+0.4
-0.6
stress
Choline chloride 90 mM
+0.5
+0.0
-0.4
+0.3
+0.3
stress
Benzalkonium Chloride 0.002 mg/ml
-0.1
+0.3
-0.1
+0.6
+0.3
temperature
Glucose defined media 37C sample1
+0.3
+0.2
+0.6
+0.3
-0.2
carbon source
propionate (C)
+0.0
+0.5
+0.7
+0.0
-0.1
stress
Dimethyl Sulfoxide 5 vol%
-0.1
+0.2
+0.6
+0.4
+0.2
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.1
+0.0
+0.2
+0.4
+0.7
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.3
+0.4
+0.4
+0.1
+0.2
stress
Chlorate 75 mM
+0.3
+0.6
+0.5
+0.8
+0.7
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