Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_4106 and Psest_4107 are separated by 130 nucleotidesPsest_4107 and Psest_4108 overlap by 4 nucleotidesPsest_4108 and Psest_4109 overlap by 4 nucleotidesPsest_4109 and Psest_4110 are separated by 677 nucleotides Psest_4106: Psest_4106 - formate dehydrogenase, gamma subunit, at 4,287,816 to 4,288,439 _4106 Psest_4107: Psest_4107 - formate dehydrogenase accessory protein FdhE, at 4,288,570 to 4,289,487 _4107 Psest_4108: Psest_4108 - seryl-tRNA(sec) selenium transferase, at 4,289,484 to 4,290,893 _4108 Psest_4109: Psest_4109 - selenocysteine-specific elongation factor SelB, at 4,290,890 to 4,292,806 _4109 Psest_4110: Psest_4110 - Deoxycytidylate deaminase, at 4,293,484 to 4,295,079 _4110
Group Condition Psest_4106 Psest_4107 Psest_4108 Psest_4109 Psest_4110
RCH2 grown on a colony of Serratia -1.7 -0.4 -0.1 -0.4 -0.0
stress Def Fusidic 0.064 mg/ml -0.6 -0.9 -0.4 -0.4 +0.3
stress Def Cephalothin 0.08 mg/ml -0.4 -0.9 -0.1 -0.9 +0.3
nitrogen source L-Isoleucine (N) -0.4 +0.2 -1.5 -0.3 +0.4
lb LB +0.2 -0.7 -0.6 -0.7 +0.3
stress sodium fluoride 6.25 mM -0.1 -0.3 -0.5 -0.9 +0.8
carbon source propionate (C) -0.9 -0.4 +0.3 -0.3 +0.3
stress Def Carbenicillin 0.008 mg/ml +0.4 -0.5 +0.1 +0.5 -1.3
stress Def 2-Furfuraldehyde 0.032 vol% -0.8 -0.4 +0.9 +0.2 -0.6
stress Paraquat dichloride 0.015 mg/ml -0.8 -0.1 +0.4 -0.7 +0.4
stress Chlorate 75 mM -0.2 -0.8 -0.4 +0.6 +0.1
temperature LB 30C timecourse1 timepoint 1 -0.6 +0.2 +0.6 -0.8 +0.4
stress Cisplatin 0.003 mg/ml -0.6 +0.4 -0.9 +0.3 +0.6
stress D-Cycloserine 0.032 mg/ml -0.3 -0.5 -0.4 -0.1 +1.4
stress Cephalothin 0.04 mg/ml +0.7 -0.0 +0.2 +0.5 -1.2
stress Vanillin 2 mM -0.2 +0.7 -0.5 -0.7 +0.7
stress D-Cycloserine 0.032 mg/ml -0.2 +0.0 -0.4 -0.6 +1.5
nitrogen source L-Alanine (N) -0.6 +0.0 -0.3 -0.1 +1.5
carbon source L-tyrosine (C) -0.5 -0.3 -0.0 -0.0 +1.4
stress Def Benzalkonium Chloride 0.002 mg/ml +0.4 +0.1 +0.8 +0.5 -1.3
stress Def Carbenicillin 0.02 mg/ml +0.7 -0.4 -0.2 +0.8 -0.2
stress nitrite 2.5 mM -0.7 -0.1 +0.5 +0.6 +0.4
carbon source L-tyrosine (C) -0.3 +0.2 -0.5 +0.3 +1.2
stress nitrite 2.5 mM -0.7 -0.1 +0.7 +0.6 +0.5
stress methylglyoxal 0.0016 vol% -0.3 +0.2 -0.9 -0.4 +2.4
stress Furfuryl Alcohol 0.05 vol% -0.2 +0.3 -0.8 +0.5 +1.3
stress Def Polymyxin B sulfate 0.00008 mg/ml +0.3 +0.3 +0.6 +1.0 -0.9
radiation Ionizing radiation, 319.06 Gy, +0.5 -0.4 +0.1 +0.1 +1.3
nitrogen source L-Glutamic (N) +1.0 +0.4 +0.0 +0.5 -0.3
radiation Ionizing radiation, 319.06 Gy, -0.2 +0.1 +0.5 +0.3 +1.5
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