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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4106 and Psest_4107 are separated by 130 nucleotides
Psest_4107 and Psest_4108 overlap by 4 nucleotides
Psest_4108 and Psest_4109 overlap by 4 nucleotides
Psest_4109 and Psest_4110 are separated by 677 nucleotides
Psest_4106: Psest_4106 - formate dehydrogenase, gamma subunit, at 4,287,816 to 4,288,439
_4106
Psest_4107: Psest_4107 - formate dehydrogenase accessory protein FdhE, at 4,288,570 to 4,289,487
_4107
Psest_4108: Psest_4108 - seryl-tRNA(sec) selenium transferase, at 4,289,484 to 4,290,893
_4108
Psest_4109: Psest_4109 - selenocysteine-specific elongation factor SelB, at 4,290,890 to 4,292,806
_4109
Psest_4110: Psest_4110 - Deoxycytidylate deaminase, at 4,293,484 to 4,295,079
_4110
Group
Condition
Psest
_4106
Psest
_4107
Psest
_4108
Psest
_4109
Psest
_4110
RCH2 grown on a colony of Serratia
-1.7
-0.4
-0.1
-0.4
-0.0
stress
Def Fusidic 0.064 mg/ml
-0.6
-0.9
-0.4
-0.4
+0.3
stress
Def Cephalothin 0.08 mg/ml
-0.4
-0.9
-0.1
-0.9
+0.3
nitrogen source
L-Isoleucine (N)
-0.4
+0.2
-1.5
-0.3
+0.4
lb
LB
+0.2
-0.7
-0.6
-0.7
+0.3
stress
sodium fluoride 6.25 mM
-0.1
-0.3
-0.5
-0.9
+0.8
carbon source
propionate (C)
-0.9
-0.4
+0.3
-0.3
+0.3
stress
Def Carbenicillin 0.008 mg/ml
+0.4
-0.5
+0.1
+0.5
-1.3
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.8
-0.4
+0.9
+0.2
-0.6
stress
Paraquat dichloride 0.015 mg/ml
-0.8
-0.1
+0.4
-0.7
+0.4
stress
Chlorate 75 mM
-0.2
-0.8
-0.4
+0.6
+0.1
temperature
LB 30C timecourse1 timepoint 1
-0.6
+0.2
+0.6
-0.8
+0.4
stress
Cisplatin 0.003 mg/ml
-0.6
+0.4
-0.9
+0.3
+0.6
stress
D-Cycloserine 0.032 mg/ml
-0.3
-0.5
-0.4
-0.1
+1.4
stress
Cephalothin 0.04 mg/ml
+0.7
-0.0
+0.2
+0.5
-1.2
stress
Vanillin 2 mM
-0.2
+0.7
-0.5
-0.7
+0.7
stress
D-Cycloserine 0.032 mg/ml
-0.2
+0.0
-0.4
-0.6
+1.5
nitrogen source
L-Alanine (N)
-0.6
+0.0
-0.3
-0.1
+1.5
carbon source
L-tyrosine (C)
-0.5
-0.3
-0.0
-0.0
+1.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.4
+0.1
+0.8
+0.5
-1.3
stress
Def Carbenicillin 0.02 mg/ml
+0.7
-0.4
-0.2
+0.8
-0.2
stress
nitrite 2.5 mM
-0.7
-0.1
+0.5
+0.6
+0.4
carbon source
L-tyrosine (C)
-0.3
+0.2
-0.5
+0.3
+1.2
stress
nitrite 2.5 mM
-0.7
-0.1
+0.7
+0.6
+0.5
stress
methylglyoxal 0.0016 vol%
-0.3
+0.2
-0.9
-0.4
+2.4
stress
Furfuryl Alcohol 0.05 vol%
-0.2
+0.3
-0.8
+0.5
+1.3
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.3
+0.3
+0.6
+1.0
-0.9
radiation
Ionizing radiation, 319.06 Gy,
+0.5
-0.4
+0.1
+0.1
+1.3
nitrogen source
L-Glutamic (N)
+1.0
+0.4
+0.0
+0.5
-0.3
radiation
Ionizing radiation, 319.06 Gy,
-0.2
+0.1
+0.5
+0.3
+1.5
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