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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4088 and Psest_4089 are separated by 141 nucleotides
Psest_4089 and Psest_4090 are separated by 551 nucleotides
Psest_4090 and Psest_4091 overlap by 4 nucleotides
Psest_4091 and Psest_4092 are separated by 10 nucleotides
Psest_4088: Psest_4088 - Transcriptional regulators, at 4,263,879 to 4,264,745
_4088
Psest_4089: Psest_4089 - glucose-6-phosphate 1-dehydrogenase, at 4,264,887 to 4,266,329
_4089
Psest_4090: Psest_4090 - diaminobutyrate acetyltransferase, at 4,266,881 to 4,267,462
_4090
Psest_4091: Psest_4091 - diaminobutyrate--2-oxoglutarate aminotransferase, at 4,267,459 to 4,268,736
_4091
Psest_4092: Psest_4092 - Ectoine synthase., at 4,268,747 to 4,269,148
_4092
Group
Condition
Psest
_4088
Psest
_4089
Psest
_4090
Psest
_4091
Psest
_4092
temperature
Glucose defined 30C timecourse1 timepoint 2
-4.2
-0.1
+0.0
+0.1
-0.2
stress
Def Chloride 400 mM
+0.3
-0.5
-1.6
-1.0
-1.1
nutrient
L-Histidine
-2.7
-0.2
-0.6
-0.1
-0.3
carbon source
D-Glucose (C)
-3.9
-0.0
+0.0
+0.1
+0.1
carbon source
propionate (C)
-2.8
-0.5
-0.5
+0.2
-0.1
temperature
Glucose defined 30C timecourse1 timepoint 1
-3.6
-0.0
+0.1
-0.0
-0.0
temperature
Glucose defined 30C timecourse1 timepoint 3
-3.9
-0.0
+0.2
+0.1
-0.0
vitamin
With vitamins t2
-2.7
+0.0
-0.5
-0.3
-0.0
stress
D-Cycloserine 0.032 mg/ml
-3.5
+0.2
-0.1
+0.0
+0.0
nutrient
Min media with glucose
-2.5
+0.0
-0.3
-0.4
-0.1
carbon source
Glucose defined media
-3.0
+0.1
+0.1
-0.0
-0.3
carbon source
Glucose defined media
-3.2
+0.0
+0.3
-0.0
-0.2
carbon source
D-Gluconic Acid (C)
-3.1
-0.0
+0.0
+0.1
+0.0
temperature
Glucose defined media 26C sample1
-2.7
-0.2
+0.4
+0.1
-0.4
stress
L-Lysine 200 mM
+0.3
-0.4
-0.7
-1.1
-1.0
carbon source
D-Glucose (C)
-2.8
-0.1
+0.2
-0.0
+0.0
nutrient
L-Histidine
-2.3
-0.1
+0.2
-0.2
-0.2
stress
D-Cycloserine 0.032 mg/ml
-2.3
+0.2
-0.5
+0.0
+0.0
carbon source
D-Gluconic Acid (C)
-3.1
-0.1
+0.3
+0.2
+0.2
carbon source
D-Maltose (C)
-3.2
+0.2
+0.4
+0.0
+0.2
stress
benzoic 0.4 mg/ml
-2.2
+0.4
-0.6
+0.0
+0.1
stress
Chloride 200 mM
-1.6
+0.3
-1.0
-0.1
+0.1
carbon source
D-Maltose (C)
-2.9
+0.3
+0.3
+0.1
+0.2
vitamin
No vitamins t2
-2.4
+0.0
+0.2
-0.0
+0.3
stress
Bacitracin 0.25 mg/ml
-1.4
+0.3
-1.0
+0.4
+0.1
RCH2 grown on a colony of N2C3
-0.7
+0.2
+1.6
+0.6
+0.0
carbon source
D-Fructose (C)
+2.7
-0.5
-0.4
+0.1
-0.0
carbon source
D-Fructose (C)
+2.9
-0.9
+0.2
+0.1
+0.0
stress
Phosphomycin 0.012 mg/ml
+4.1
-0.1
-0.1
+0.1
-0.2
stress
Phosphomycin 0.012 mg/ml
+4.1
+0.2
-0.2
-0.2
+0.0
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