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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_4065 and Psest_4066 are separated by 9 nucleotides
Psest_4066 and Psest_4067 are separated by 52 nucleotides
Psest_4067 and Psest_4068 are separated by 84 nucleotides
Psest_4068 and Psest_4069 are separated by 103 nucleotides
Psest_4065: Psest_4065 - Uracil-DNA glycosylase, at 4,236,774 to 4,237,457
_4065
Psest_4066: Psest_4066 - Uncharacterized protein conserved in bacteria, at 4,237,467 to 4,238,003
_4066
Psest_4067: Psest_4067 - Predicted membrane protein, at 4,238,056 to 4,238,307
_4067
Psest_4068: Psest_4068 - phosphoribosylaminoimidazole carboxylase, PurK protein, at 4,238,392 to 4,239,477
_4068
Psest_4069: Psest_4069 - phosphoribosylaminoimidazole carboxylase, PurE protein, at 4,239,581 to 4,240,069
_4069
Group
Condition
Psest
_4065
Psest
_4066
Psest
_4067
Psest
_4068
Psest
_4069
stress
Def Carbenicillin 0.02 mg/ml
+0.2
-0.3
-1.7
N.D.
N.D.
stress
Benzethonium chloride 0.01 mM
-0.6
-0.3
-0.6
N.D.
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.3
-0.3
-0.9
N.D.
N.D.
stress
2-Furfuraldehyde 0.05 vol%
+0.2
-0.3
-1.2
N.D.
N.D.
stress
methylglyoxal 0.0016 vol%
-0.3
-0.4
-0.6
N.D.
N.D.
carbon source
L-tyrosine (C)
-0.2
+0.0
-1.1
N.D.
N.D.
stress
Thallium(I) acetate 0.09 mg/ml
-0.1
+0.1
-1.3
N.D.
N.D.
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.6
-0.2
-0.4
N.D.
N.D.
nitrogen source
L-Alanine (N)
-0.3
-0.2
-0.5
N.D.
N.D.
nitrogen source
L-Glutamine (N)
-0.2
-0.0
-0.9
N.D.
N.D.
radiation
Ionizing radiation, 0 Gy
-0.5
+0.2
-0.7
N.D.
N.D.
stress
Paraquat dichloride 0.015 mg/ml
+0.2
-0.5
-0.6
N.D.
N.D.
stress
L-Lysine 200 mM
+0.2
-0.1
-0.9
N.D.
N.D.
RCH2 grown on a colony of N2F3
+0.3
-0.7
-0.4
N.D.
N.D.
carbon source
Glycolic Acid (C)
+0.0
+0.2
-0.9
N.D.
N.D.
stress
Doxycycline hyclate 0.0002 mg/ml
-0.6
-0.3
+0.4
N.D.
N.D.
RCH2 grown on a colony of Serratia
+0.3
+0.4
-1.3
N.D.
N.D.
stress
Fusidic 0.016 mg/ml
+0.1
+0.3
-0.9
N.D.
N.D.
vitamin
No vitamins t2
-0.2
+0.6
-0.6
N.D.
N.D.
stress
Lactate-nitrate; anaerobic; cobalt stress sample1
+0.1
-0.6
+0.5
N.D.
N.D.
stress
Choline Lysine 20 mM
-0.1
-0.5
+0.6
N.D.
N.D.
stress
Thallium(I) acetate 0.1 mg/ml
-0.4
-0.1
+0.6
N.D.
N.D.
carbon source
D-Gluconic Acid (C)
-0.1
-0.3
+0.7
N.D.
N.D.
lb
LB
-0.1
-0.2
+0.7
N.D.
N.D.
stress
Nalidixic 0.00390625 mg/ml
+0.4
+0.5
-0.5
N.D.
N.D.
nutrient
Min media with glucose
+0.5
+0.6
-0.2
N.D.
N.D.
RCH2 grown on a colony of ecoli
-0.1
+0.2
+0.8
N.D.
N.D.
vitamin
With vitamins t1
+0.3
+0.6
+0.1
N.D.
N.D.
carbon source
propionate (C)
+0.0
+0.5
+0.7
N.D.
N.D.
stress
Carbenicillin 0.008 mg/ml
+0.3
+0.3
+1.0
N.D.
N.D.
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