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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3995 and Psest_3996 are separated by 225 nucleotides
Psest_3996 and Psest_3997 are separated by 2 nucleotides
Psest_3997 and Psest_3998 are separated by 110 nucleotides
Psest_3998 and Psest_3999 are separated by 209 nucleotides
Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985
_3995
Psest_3996: Psest_3996 - Transcriptional accessory protein, at 4,165,211 to 4,167,544
_3996
Psest_3997: Psest_3997 - uncharacterized domain 1, at 4,167,547 to 4,167,936
_3997
Psest_3998: Psest_3998 - glutamate--cysteine ligase, at 4,168,047 to 4,169,624
_3998
Psest_3999: Psest_3999 - Acetyl esterase (deacetylase), at 4,169,834 to 4,171,570
_3999
Group
Condition
Psest
_3995
Psest
_3996
Psest
_3997
Psest
_3998
Psest
_3999
carbon source
L-tyrosine (C)
-4.7
+0.3
+0.2
-3.0
+0.2
nitrogen source
L-Isoleucine (N)
-2.4
-1.0
-1.1
-1.6
-0.3
carbon source
L-tyrosine (C)
-4.5
+0.6
+0.4
-2.6
-0.1
carbon source
Fumarate (C)
-0.8
-0.2
-0.5
-4.5
+0.1
carbon source
L-Leucine (C)
-0.2
+0.0
+0.0
-5.3
-0.1
carbon source
D-Alanine (C)
-0.5
-0.0
+0.0
-4.8
-0.1
carbon source
L-Asparagine (C)
-0.7
-0.1
-0.2
-4.4
-0.0
carbon source
L-Isoleucine (C)
-0.2
+0.0
-0.2
-4.8
-0.0
stress
Def Benzethonium chloride 0.008 mM
-0.3
-0.5
-0.7
-3.8
+0.2
stress
Lactate-nitrate; anaerobic; copper stress sample1
-1.0
-0.3
-0.2
-3.7
+0.0
carbon source
D-Alanine (C)
+0.2
-0.2
+0.2
-5.3
+0.1
stress
Choline Lysine 20 mM
-6.5
+0.8
-0.4
+1.0
+0.1
carbon source
D-Lactate (C)
-0.2
-0.2
-0.2
-4.5
+0.0
carbon source
Fumarate (C)
-0.6
-0.0
-0.3
-4.1
+0.0
carbon source
L-Malic (C)
-0.4
-0.1
-0.2
-4.4
+0.1
carbon source
L-Isoleucine (C)
-0.3
-0.0
+0.1
-4.8
+0.1
carbon source
D-Lactate (C)
-0.7
+0.0
-0.2
-4.0
+0.1
carbon source
L-Leucine (C)
+0.6
+0.1
-0.2
-5.2
+0.0
carbon source
Glycolic Acid (C)
-0.2
+0.2
-0.2
-4.6
+0.1
stress
Choline Lysine 20 mM
-6.6
+1.1
-0.4
+1.3
-0.0
carbon source
L-Malic (C)
+0.5
+0.1
-0.1
-5.0
-0.0
nitrogen source
nitrate (N)
-0.2
-0.3
+0.2
-4.2
+0.1
carbon source
Glycolic Acid (C)
+0.3
+0.1
-0.2
-4.8
+0.1
carbon source
L-Glutamic (C)
-0.3
+0.2
+0.1
-4.5
+0.1
carbon source
acetate (C)
+0.3
-0.1
-0.2
-4.0
-0.3
carbon source
L-Asparagine (C)
+0.5
-0.2
-0.0
-4.3
+0.0
nitrogen source
L-Proline (N)
+1.0
+0.3
+0.7
-3.0
+0.2
stress
nitrate 250 mM
+3.0
+0.7
-0.3
-1.8
+0.2
stress
Chlorate 75 mM
-1.7
+0.5
-0.1
+3.0
+1.3
stress
A22 0.005 mg/ml
-0.8
-0.4
-0.3
+4.8
+0.2
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