Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3992 and Psest_3993 overlap by 4 nucleotidesPsest_3993 and Psest_3994 are separated by 21 nucleotidesPsest_3994 and Psest_3995 are separated by 76 nucleotidesPsest_3995 and Psest_3996 are separated by 225 nucleotides Psest_3992: Psest_3992 - Uncharacterized protein conserved in archaea, at 4,161,452 to 4,161,919 _3992 Psest_3993: Psest_3993 - alpha-L-glutamate ligases, RimK family, at 4,161,916 to 4,162,821 _3993 Psest_3994: Psest_3994 - Signal transduction histidine kinase, at 4,162,843 to 4,164,174 _3994 Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985 _3995 Psest_3996: Psest_3996 - Transcriptional accessory protein, at 4,165,211 to 4,167,544 _3996
Group Condition Psest_3992 Psest_3993 Psest_3994 Psest_3995 Psest_3996
stress Choline Lysine 20 mM -0.4 +0.4 -4.4 -6.5 +0.8
stress Choline Lysine 20 mM -0.0 +0.3 -4.1 -6.6 +1.1
carbon source L-tyrosine (C) +0.3 +0.7 -3.3 -4.5 +0.6
carbon source L-tyrosine (C) +0.8 +0.4 -2.9 -4.7 +0.3
nitrogen source L-Isoleucine (N) -0.6 -0.9 -0.4 -2.4 -1.0
stress Def Benzalkonium Chloride 0.002 mg/ml -1.3 -0.9 +0.1 -0.7 -0.9
stress Bacitracin 0.25 mg/ml -0.4 -0.3 +0.2 -0.5 -2.2
stress Anaerobic 500 uM Zinc chloride sample3 +0.1 -0.2 -0.4 -1.7 -0.5
stress A22 0.005 mg/ml -0.4 -0.6 -0.4 -0.8 -0.4
stress Anaerobic 500 uM Zinc chloride sample1 -0.1 -0.4 -0.4 -1.4 -0.4
stress Def Cephalothin 0.08 mg/ml +0.1 +0.1 -0.4 -1.4 -0.8
temperature LB 30C timecourse2 timepoint 1 +0.4 -0.0 -0.1 -2.8 +0.1
stress Def Phosphomycin 0.125 mg/ml -0.6 +0.2 -0.6 -0.7 -0.6
stress Anaerobic 500 uM Zinc chloride sample2 +0.3 -0.1 -0.3 -1.5 -0.5
nitrogen source nitrite (N) -0.6 -1.2 +0.3 +0.1 -0.4
carbon source propionate (C) +0.4 +0.1 -1.4 -0.9 +0.1
stress Chlorate 75 mM -0.5 -0.7 +0.6 -1.7 +0.5
stress Cephalothin 0.04 mg/ml -1.1 -0.5 +0.1 +0.8 -1.0
stress nitrate 200 mM -0.9 -0.5 -1.0 +0.8 +0.0
stress Def Chlorate 20 mM -0.6 -1.1 +0.3 +0.3 +0.4
stress Def 2-Furfuraldehyde 0.032 vol% -0.6 +0.2 +1.1 -1.1 -0.3
stress nitrate 200 mM -0.5 -0.5 -0.5 +1.3 -0.0
nitrogen source L-Valine (N) +1.3 -1.1 +0.1 -0.3 -0.1
stress Gentamicin 0.0016 mg/ml +0.3 +0.4 +0.9 -1.1 -0.6
stress Def Chlorate 40 mM -0.4 -0.8 +0.2 +0.8 +0.7
nitrogen source L-Valine (N) +1.2 -1.2 -0.4 +1.0 +0.0
stress Nickel (II) chloride 0.75 mM +0.3 +0.1 -0.3 +1.9 -0.0
nitrogen source L-Alanine (N) +1.0 +0.7 +0.5 -0.2 +0.4
stress Def Neomycin 0.0008 mg/ml +1.2 +0.7 +0.2 +0.6 +0.4
stress nitrate 250 mM +0.0 -0.2 +1.0 +3.0 +0.7
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