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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3987 and Psest_3988 are separated by 166 nucleotides
Psest_3988 and Psest_3989 are separated by 214 nucleotides
Psest_3989 and Psest_3990 are separated by 196 nucleotides
Psest_3990 and Psest_3991 overlap by 4 nucleotides
Psest_3987: Psest_3987 - Nitroreductase, at 4,156,552 to 4,157,154
_3987
Psest_3988: Psest_3988 - phosphoenolpyruvate carboxykinase (ATP), at 4,157,321 to 4,158,865
_3988
Psest_3989: Psest_3989 - Disulfide bond chaperones of the HSP33 family, at 4,159,080 to 4,159,967
_3989
Psest_3990: Psest_3990 - PAP2 superfamily., at 4,160,164 to 4,160,955
_3990
Psest_3991: Psest_3991 - Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog), at 4,160,952 to 4,161,350
_3991
Group
Condition
Psest
_3987
Psest
_3988
Psest
_3989
Psest
_3990
Psest
_3991
stress
Def Polymyxin B sulfate 0.00008 mg/ml
-0.4
-1.6
-0.3
-0.8
-0.5
carbon source
RCH2 defined media
-0.6
-2.0
-0.3
-0.3
-0.4
stress
Doxycycline hyclate 0.0002 mg/ml
-0.5
+0.1
-0.2
-2.9
+0.1
carbon source
succinate (C)
-0.1
-2.4
-0.2
-0.2
-0.4
carbon source
D-Fructose (C)
-0.1
-2.7
+0.2
-0.2
+0.1
nitrogen source
nitrite (N)
-0.5
-2.3
-0.3
+0.1
+0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.4
-2.5
-0.0
+0.7
-0.5
stress
Def Doxycycline hyclate 0.0002 mg/ml
-0.1
-0.6
+0.2
-2.2
+0.3
stress
Def Benzethonium chloride 0.008 mM
-0.1
-2.7
+0.1
+0.4
-0.1
stress
Bacitracin 0.25 mg/ml
+0.2
+2.2
-0.3
-4.7
+0.5
stress
Bacitracin 0.25 mg/ml
+0.1
+2.4
+0.3
-4.0
-0.5
stress
Vanillin 2 mM
-0.1
+1.1
-0.2
-1.7
-0.9
RCH2 grown on a colony of Serratia
-0.0
-1.9
-0.2
-0.4
+0.8
stress
Phosphomycin 0.012 mg/ml
-0.0
-3.1
+0.4
+0.9
+0.6
stress
Def Chlorate 20 mM
-0.5
-2.0
+0.4
+1.0
+0.1
stress
Furfuryl Alcohol 0.05 vol%
-0.9
+1.4
-0.2
-0.9
-0.1
stress
Def Vancomycin 0.016 mg/ml
-0.3
+1.2
+0.1
-2.0
+0.1
stress
Def Chlorate 40 mM
-0.2
-2.5
+0.0
+1.1
+0.8
stress
Choline chloride 90 mM
+0.4
-2.6
+0.4
+0.8
+0.3
stress
Phosphomycin 0.012 mg/ml
-0.1
-2.1
+0.7
+0.8
+0.0
stress
methylglyoxal 0.0016 vol%
-0.5
+1.2
+0.0
-1.7
+0.3
carbon source
L-tyrosine (C)
+0.4
-1.6
+0.6
+0.6
-0.2
stress
Benzalkonium Chloride 0.002 mg/ml
+0.2
+1.8
-0.1
-1.8
-0.3
nitrogen source
L-Isoleucine (N)
+0.0
+1.6
-0.7
-0.7
-0.3
RCH2 grown on a colony of N2A2
-0.6
-1.0
-0.1
+0.4
+1.4
stress
Paraquat dichloride 0.015 mg/ml
+0.1
+1.5
-0.4
+0.3
-1.2
stress
Cephalothin 0.04 mg/ml
+0.0
+1.7
+0.2
-1.2
+0.0
stress
Chlorate 75 mM
-0.6
+2.6
+0.0
-0.9
-0.1
carbon source
propionate (C)
-0.2
-0.1
+0.2
+0.1
+2.7
stress
Def Neomycin 0.0008 mg/ml
+0.1
-0.7
+0.8
+2.4
+1.6
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