Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3973 and Psest_3974 overlap by 4 nucleotidesPsest_3974 and Psest_3975 overlap by 8 nucleotidesPsest_3975 and Psest_3976 overlap by 11 nucleotidesPsest_3976 and Psest_3977 are separated by 645 nucleotides Psest_3973: Psest_3973 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 4,140,575 to 4,140,979 _3973 Psest_3974: Psest_3974 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 4,140,976 to 4,141,986 _3974 Psest_3975: Psest_3975 - Signal transduction histidine kinase, at 4,141,979 to 4,142,851 _3975 Psest_3976: Psest_3976 - PAS domain S-box, at 4,142,841 to 4,144,787 _3976 Psest_3977: Psest_3977 - Cold shock proteins, at 4,145,433 to 4,145,645 _3977
Group Condition Psest_3973 Psest_3974 Psest_3975 Psest_3976 Psest_3977
carbon source propionate (C) -2.2 -0.1 -0.5 -0.2 -0.5
stress Carbenicillin 0.008 mg/ml -0.6 -0.8 -0.7 -0.2 -0.1
RCH2 grown on a colony of Serratia -0.3 -1.3 +0.0 -0.3 -0.6
stress L-Lysine 200 mM -2.0 -0.4 -0.2 -0.1 +0.4
RCH2 grown on a colony of N2F3 -1.3 -0.4 -0.2 -0.2 -0.2
stress sodium fluoride 8.5 mM -1.6 -0.6 -0.1 +0.1 -0.1
stress Def Chlorate 20 mM -1.6 -0.2 +0.1 -0.2 +0.3
stress Def Chloride 400 mM -1.8 +1.0 +0.3 +0.1 +0.3
RCH2 grown on a colony of N2A2 -0.8 +0.9 +0.5 +0.1 +0.0
RCH2 grown on a colony of Serratia +1.6 -0.6 -0.0 -0.1 +0.1
radiation Ionizing radiation, 319.06 Gy, +1.0 +0.8 +0.3 +0.3 -0.6
RCH2 grown on a colony of ecoli +1.7 +0.1 -0.2 +0.1 +0.2
radiation Ionizing radiation, 0 Gy +0.4 +0.7 +0.8 +0.7 -0.3
stress 2-Furfuraldehyde 0.05 vol% +1.4 +0.6 +0.2 +0.3 -0.1
carbon source RCH2 defined media +0.5 +0.8 +0.4 +0.3 +0.4
nitrogen source Adenine (N) +0.9 +0.4 +0.5 +0.5 +0.2
stress Gentamicin 0.0016 mg/ml +0.1 +0.7 +0.8 +0.6 +0.4
carbon source RCH2 defined media +0.5 +0.9 +0.5 +0.5 +0.4
nitrogen source D-Alanine (N) +0.7 +0.8 +0.4 +0.5 +0.5
stress nitrate 250 mM +0.6 +0.9 +0.8 +0.7 -0.2
anaerobic nitrate reduction - anaerobic +0.3 +1.0 +0.7 +0.5 +0.5
stress Fusidic 0.016 mg/ml +0.6 +0.9 +0.6 +0.8 +0.4
stress Def Benzethonium chloride 0.008 mM +1.0 +0.8 +0.7 +0.7 +0.2
stress Def Carbenicillin 0.008 mg/ml +0.9 +1.1 +0.4 +0.8 +0.8
nitrogen source nitrite (N) +1.0 +1.0 +0.7 +0.9 +0.8
carbon source butyrate (C) +0.8 +1.4 +1.0 +1.1 +0.5
stress Def 2-Furfuraldehyde 0.032 vol% +1.3 +1.7 +1.2 +0.8 +0.3
stress Def Benzalkonium Chloride 0.002 mg/ml +1.3 +1.5 +1.1 +1.0 +0.8
nitrogen source nitrite (N) +1.3 +1.4 +1.1 +1.1 +0.8
stress Cephalothin 0.04 mg/ml +1.5 +1.5 +1.2 +1.4 +1.0
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