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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3973 and Psest_3974 overlap by 4 nucleotides
Psest_3974 and Psest_3975 overlap by 8 nucleotides
Psest_3975 and Psest_3976 overlap by 11 nucleotides
Psest_3976 and Psest_3977 are separated by 645 nucleotides
Psest_3973: Psest_3973 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 4,140,575 to 4,140,979
_3973
Psest_3974: Psest_3974 - Anti-sigma regulatory factor (Ser/Thr protein kinase), at 4,140,976 to 4,141,986
_3974
Psest_3975: Psest_3975 - Signal transduction histidine kinase, at 4,141,979 to 4,142,851
_3975
Psest_3976: Psest_3976 - PAS domain S-box, at 4,142,841 to 4,144,787
_3976
Psest_3977: Psest_3977 - Cold shock proteins, at 4,145,433 to 4,145,645
_3977
Group
Condition
Psest
_3973
Psest
_3974
Psest
_3975
Psest
_3976
Psest
_3977
carbon source
propionate (C)
-2.2
-0.1
-0.5
-0.2
-0.5
stress
Carbenicillin 0.008 mg/ml
-0.6
-0.8
-0.7
-0.2
-0.1
RCH2 grown on a colony of Serratia
-0.3
-1.3
+0.0
-0.3
-0.6
stress
L-Lysine 200 mM
-2.0
-0.4
-0.2
-0.1
+0.4
RCH2 grown on a colony of N2F3
-1.3
-0.4
-0.2
-0.2
-0.2
stress
sodium fluoride 8.5 mM
-1.6
-0.6
-0.1
+0.1
-0.1
stress
Def Chlorate 20 mM
-1.6
-0.2
+0.1
-0.2
+0.3
stress
Def Chloride 400 mM
-1.8
+1.0
+0.3
+0.1
+0.3
RCH2 grown on a colony of N2A2
-0.8
+0.9
+0.5
+0.1
+0.0
RCH2 grown on a colony of Serratia
+1.6
-0.6
-0.0
-0.1
+0.1
radiation
Ionizing radiation, 319.06 Gy,
+1.0
+0.8
+0.3
+0.3
-0.6
RCH2 grown on a colony of ecoli
+1.7
+0.1
-0.2
+0.1
+0.2
radiation
Ionizing radiation, 0 Gy
+0.4
+0.7
+0.8
+0.7
-0.3
stress
2-Furfuraldehyde 0.05 vol%
+1.4
+0.6
+0.2
+0.3
-0.1
carbon source
RCH2 defined media
+0.5
+0.8
+0.4
+0.3
+0.4
nitrogen source
Adenine (N)
+0.9
+0.4
+0.5
+0.5
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.1
+0.7
+0.8
+0.6
+0.4
carbon source
RCH2 defined media
+0.5
+0.9
+0.5
+0.5
+0.4
nitrogen source
D-Alanine (N)
+0.7
+0.8
+0.4
+0.5
+0.5
stress
nitrate 250 mM
+0.6
+0.9
+0.8
+0.7
-0.2
anaerobic
nitrate reduction - anaerobic
+0.3
+1.0
+0.7
+0.5
+0.5
stress
Fusidic 0.016 mg/ml
+0.6
+0.9
+0.6
+0.8
+0.4
stress
Def Benzethonium chloride 0.008 mM
+1.0
+0.8
+0.7
+0.7
+0.2
stress
Def Carbenicillin 0.008 mg/ml
+0.9
+1.1
+0.4
+0.8
+0.8
nitrogen source
nitrite (N)
+1.0
+1.0
+0.7
+0.9
+0.8
carbon source
butyrate (C)
+0.8
+1.4
+1.0
+1.1
+0.5
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.3
+1.7
+1.2
+0.8
+0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.3
+1.5
+1.1
+1.0
+0.8
nitrogen source
nitrite (N)
+1.3
+1.4
+1.1
+1.1
+0.8
stress
Cephalothin 0.04 mg/ml
+1.5
+1.5
+1.2
+1.4
+1.0
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