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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3846 and Psest_3847 are separated by 100 nucleotides
Psest_3847 and Psest_3848 are separated by 192 nucleotides
Psest_3848 and Psest_3849 are separated by 51 nucleotides
Psest_3849 and Psest_3850 are separated by 142 nucleotides
Psest_3846: Psest_3846 - phosphate regulon sensor kinase PhoR, at 4,017,253 to 4,018,554
_3846
Psest_3847: Psest_3847 - Hemolysins and related proteins containing CBS domains, at 4,018,655 to 4,019,998
_3847
Psest_3848: Psest_3848 - hypothetical protein, at 4,020,191 to 4,020,952
_3848
Psest_3849: Psest_3849 - Membrane proteins related to metalloendopeptidases, at 4,021,004 to 4,021,900
_3849
Psest_3850: Psest_3850 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,022,043 to 4,022,960
_3850
Group
Condition
Psest
_3846
Psest
_3847
Psest
_3848
Psest
_3849
Psest
_3850
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.4
+0.1
+0.0
-0.8
-4.7
carbon source
L-tyrosine (C)
+0.4
+0.0
-0.1
-0.5
-3.9
carbon source
succinate (C)
+0.1
-0.1
+0.0
-0.3
-3.3
stress
Def Chloride 400 mM
+0.2
-0.4
-0.2
-0.5
-2.1
RCH2 grown on a colony of N2F3
+0.3
+0.5
-0.1
+0.3
-3.7
stress
Thallium(I) acetate 0.09 mg/ml
-0.1
+0.0
+0.0
-0.2
-2.5
carbon source
L-Lactate (C)
+0.1
-0.1
-0.2
-0.4
-2.0
stress
benzoic 0.4 mg/ml
-0.1
+0.0
-0.1
+0.1
-2.2
carbon source
butyrate (C)
+0.1
+0.2
+0.0
-0.2
-2.3
stress
nitrate 200 mM
+0.2
-0.1
+0.0
-0.1
-2.0
stress
Chloride 200 mM
-0.4
+0.3
+0.1
-0.1
-1.7
nitrogen source
Putrescine (N)
+0.4
+0.0
+0.1
+0.1
-2.4
radiation
Ionizing radiation, 319.06 Gy,
-0.1
-0.1
+0.1
+0.3
-1.8
stress
Choline chloride 90 mM
-0.0
+0.5
+0.1
+0.5
-2.5
RCH2 grown on a colony of Serratia
-0.3
+0.1
+0.1
+0.7
-1.4
temperature
LB 30C timecourse2 timepoint 2
+0.2
+0.2
+0.0
+0.4
-1.7
stress
Furfuryl Alcohol 0.05 vol%
+0.4
+0.2
+0.5
+0.6
-2.2
nitrogen source
L-Citrulline (N)
+0.3
+0.1
+0.2
+0.5
-1.4
stress
Aluminum chloride 0.3 mM
-0.4
+0.0
-0.0
-0.5
+1.5
stress
sodium fluoride 8.5 mM
-0.2
-0.0
-0.2
-0.4
+1.7
RCH2 grown on a colony of N2F3
-0.1
-0.1
+0.2
-0.8
+1.6
stress
Chlorate 75 mM
+0.5
-0.3
-0.2
-1.1
+2.1
stress
perchlorate 12.5 mM
-0.3
+0.1
-0.1
-0.4
+1.8
lb
LB
-0.3
+0.1
+0.1
-0.3
+1.7
stress
Nickel (II) chloride 0.9 mM
-0.3
+0.6
+0.1
-0.5
+1.9
RCH2 grown on a colony of N2A2
+0.1
-0.0
-0.2
+0.0
+2.4
nutrient
L-tyrosine
+0.3
-0.4
+0.2
+0.0
+2.2
stress
Fusidic 0.016 mg/ml
+0.2
+0.1
-0.0
+0.2
+1.9
stress
Lactate-nitrate; anaerobic; nickel stress sample3
+0.1
+0.2
+0.0
+0.0
+2.2
stress
A22 0.002 mg/ml
+0.4
+0.1
-0.1
+0.0
+2.7
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