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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3839 and Psest_3840 are separated by 6 nucleotides
Psest_3840 and Psest_3841 overlap by 1 nucleotides
Psest_3841 and Psest_3842 are separated by 237 nucleotides
Psest_3842 and Psest_3843 are separated by 108 nucleotides
Psest_3839: Psest_3839 - D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14)
(from data)
, at 4,009,979 to 4,011,196
_3839
Psest_3840: Psest_3840 - D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14)
(from data)
, at 4,011,203 to 4,012,264
_3840
Psest_3841: Psest_3841 - D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14)
(from data)
, at 4,012,264 to 4,013,763
_3841
Psest_3842: Psest_3842 - Transcriptional regulators, at 4,014,001 to 4,014,774
_3842
Psest_3843: Psest_3843 - 4-hydroxybenzoate synthetase (chorismate lyase), at 4,014,883 to 4,015,437
_3843
Group
Condition
Psest
_3839
Psest
_3840
Psest
_3841
Psest
_3842
Psest
_3843
carbon source
Glycolic Acid (C)
-5.6
-5.7
-5.4
-5.4
-0.8
carbon source
Glycolic Acid (C)
-4.8
-5.4
-5.5
-5.4
-0.8
carbon source
D-Lactate (C)
-2.2
-2.7
-2.2
-1.1
-2.0
carbon source
D-Lactate (C)
-1.9
-2.4
-2.3
-0.8
-1.7
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.5
-0.9
-0.9
-0.6
-3.4
stress
Def Benzethonium chloride 0.008 mM
-0.6
-0.0
-0.7
-0.1
-3.2
stress
Def Chlorate 40 mM
-0.5
-1.2
-0.4
-0.6
-1.5
nitrogen source
Glycine (N)
-0.8
-1.3
-0.5
-0.1
-0.9
stress
Def Chloride 400 mM
-1.0
-1.5
+0.3
-0.0
-1.1
stress
Furfuryl Alcohol 0.05 vol%
-1.2
-0.9
-0.8
+0.4
-0.6
stress
Choline Lysine 20 mM
+0.7
-0.1
-0.1
-0.4
-3.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.3
+0.4
-0.0
-0.9
-2.6
stress
Def Chlorate 20 mM
+0.1
-0.9
-0.3
-0.9
-0.8
nitrogen source
L-Valine (N)
-1.0
-0.8
+0.2
-0.9
-0.2
nitrogen source
nitrite (N)
+0.2
-0.9
+0.3
-0.1
-2.1
carbon source
acetate (C)
+0.2
+0.2
+0.4
-0.2
-2.8
nitrogen source
L-Alanine (N)
-0.8
-0.6
+0.3
+0.9
-1.6
metal limitation
Lactate-nitrite with YE; anaerobic; sample3
+0.1
+0.5
+0.2
+0.0
-2.4
stress
Choline Lysine 20 mM
+0.4
+0.1
+0.0
+0.5
-2.6
metal limitation
Lactate-nitrite with YE; anaerobic; with copper; sample1
+0.7
+0.7
-0.0
-0.7
-2.0
carbon source
L-tyrosine (C)
+0.7
-0.8
+0.8
-0.4
-1.6
metal limitation
Aerobic, with iron sample1
+0.3
-0.1
+0.3
+0.3
-2.1
nitrogen source
nitrate (N)
-0.7
-0.7
+0.7
+0.7
-1.2
stress
Vanillin 2 mM
-0.3
-0.9
-0.9
+0.9
+0.1
carbon source
L-tyrosine (C)
+1.0
-0.6
+0.4
+0.8
-2.4
vitamin
With vitamins t1
+0.1
+0.5
-0.3
+1.1
-1.2
nutrient
Min media with glucose
+0.4
+0.3
-0.0
+1.3
-1.3
nitrogen source
L-Isoleucine (N)
+0.6
-0.9
+1.4
-0.4
+0.4
carbon source
L-Lactate (C)
+0.0
+0.4
+0.8
+1.0
-0.8
stress
Def Polymyxin B sulfate 0.0001 mg/ml
+0.6
+0.5
+1.5
+0.5
-0.2
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