Fitness for 5 genes in Pseudomonas stutzeri RCH2

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500 ntPsest_3839 and Psest_3840 are separated by 6 nucleotidesPsest_3840 and Psest_3841 overlap by 1 nucleotidesPsest_3841 and Psest_3842 are separated by 237 nucleotidesPsest_3842 and Psest_3843 are separated by 108 nucleotides Psest_3839: Psest_3839 - D-lactate/glycolate dehydrogenase, iron-sulfur subunit GlcF (EC 1.1.99.6; EC 1.1.99.14) (from data), at 4,009,979 to 4,011,196 _3839 Psest_3840: Psest_3840 - D-lactate/glycolate dehydrogenase, FAD binding subunit GlcE (EC 1.1.99.6; EC 1.1.99.14) (from data), at 4,011,203 to 4,012,264 _3840 Psest_3841: Psest_3841 - D-lactate/glycolate dehydrogenase, FAD-linked subunit GlcD (EC 1.1.99.6; EC 1.1.99.14) (from data), at 4,012,264 to 4,013,763 _3841 Psest_3842: Psest_3842 - Transcriptional regulators, at 4,014,001 to 4,014,774 _3842 Psest_3843: Psest_3843 - 4-hydroxybenzoate synthetase (chorismate lyase), at 4,014,883 to 4,015,437 _3843
Group Condition Psest_3839 Psest_3840 Psest_3841 Psest_3842 Psest_3843
carbon source Glycolic Acid (C) -5.6 -5.7 -5.4 -5.4 -0.8
carbon source Glycolic Acid (C) -4.8 -5.4 -5.5 -5.4 -0.8
carbon source D-Lactate (C) -2.2 -2.7 -2.2 -1.1 -2.0
carbon source D-Lactate (C) -1.9 -2.4 -2.3 -0.8 -1.7
stress Def 2-Furfuraldehyde 0.032 vol% -1.5 -0.9 -0.9 -0.6 -3.4
stress Def Benzethonium chloride 0.008 mM -0.6 -0.0 -0.7 -0.1 -3.2
stress Def Chlorate 40 mM -0.5 -1.2 -0.4 -0.6 -1.5
nitrogen source Glycine (N) -0.8 -1.3 -0.5 -0.1 -0.9
stress Def Chloride 400 mM -1.0 -1.5 +0.3 -0.0 -1.1
stress Furfuryl Alcohol 0.05 vol% -1.2 -0.9 -0.8 +0.4 -0.6
stress Choline Lysine 20 mM +0.7 -0.1 -0.1 -0.4 -3.0
stress Def Benzalkonium Chloride 0.002 mg/ml +0.3 +0.4 -0.0 -0.9 -2.6
stress Def Chlorate 20 mM +0.1 -0.9 -0.3 -0.9 -0.8
nitrogen source L-Valine (N) -1.0 -0.8 +0.2 -0.9 -0.2
nitrogen source nitrite (N) +0.2 -0.9 +0.3 -0.1 -2.1
carbon source acetate (C) +0.2 +0.2 +0.4 -0.2 -2.8
nitrogen source L-Alanine (N) -0.8 -0.6 +0.3 +0.9 -1.6
metal limitation Lactate-nitrite with YE; anaerobic; sample3 +0.1 +0.5 +0.2 +0.0 -2.4
stress Choline Lysine 20 mM +0.4 +0.1 +0.0 +0.5 -2.6
metal limitation Lactate-nitrite with YE; anaerobic; with copper; sample1 +0.7 +0.7 -0.0 -0.7 -2.0
carbon source L-tyrosine (C) +0.7 -0.8 +0.8 -0.4 -1.6
metal limitation Aerobic, with iron sample1 +0.3 -0.1 +0.3 +0.3 -2.1
nitrogen source nitrate (N) -0.7 -0.7 +0.7 +0.7 -1.2
stress Vanillin 2 mM -0.3 -0.9 -0.9 +0.9 +0.1
carbon source L-tyrosine (C) +1.0 -0.6 +0.4 +0.8 -2.4
vitamin With vitamins t1 +0.1 +0.5 -0.3 +1.1 -1.2
nutrient Min media with glucose +0.4 +0.3 -0.0 +1.3 -1.3
nitrogen source L-Isoleucine (N) +0.6 -0.9 +1.4 -0.4 +0.4
carbon source L-Lactate (C) +0.0 +0.4 +0.8 +1.0 -0.8
stress Def Polymyxin B sulfate 0.0001 mg/ml +0.6 +0.5 +1.5 +0.5 -0.2
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