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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3797 and Psest_3798 are separated by 6 nucleotides
Psest_3798 and Psest_3799 are separated by 103 nucleotides
Psest_3799 and Psest_3800 are separated by 171 nucleotides
Psest_3800 and Psest_3801 are separated by 169 nucleotides
Psest_3797: Psest_3797 - hypothetical protein, at 3,966,737 to 3,967,480
_3797
Psest_3798: Psest_3798 - Predicted membrane protein, at 3,967,487 to 3,968,011
_3798
Psest_3799: Psest_3799 - Methyl-accepting chemotaxis protein, at 3,968,115 to 3,969,680
_3799
Psest_3800: Psest_3800 - 3-hydroxyacyl-CoA dehydrogenase, at 3,969,852 to 3,971,378
_3800
Psest_3801: Psest_3801 - uncharacterized domain 1, at 3,971,548 to 3,971,940
_3801
Group
Condition
Psest
_3797
Psest
_3798
Psest
_3799
Psest
_3800
Psest
_3801
stress
Chlorate 75 mM
-0.3
-0.7
-0.2
-0.3
-0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
-0.8
-0.3
-0.1
+0.2
-0.4
stress
Furfuryl Alcohol 0.05 vol%
-0.3
-0.3
-0.6
-0.4
+0.1
stress
L-Lysine 200 mM
-0.5
-0.3
+0.1
-0.3
-0.3
RCH2 grown on a colony of ecoli
-0.5
+0.1
-0.4
+0.1
-0.5
carbon source
L-tyrosine (C)
-0.4
-0.5
+0.1
-0.4
+0.3
stress
Spectinomycin 0.00625 mg/ml
-0.7
+0.3
-0.2
-0.1
-0.2
stress
Cobalt chloride 0.06 mM
-0.0
+0.2
-0.6
+0.2
-0.5
RCH2 grown on a colony of 8R2A
-0.3
-0.4
-0.2
+0.3
-0.2
stress
Lactate-nitrate; anaerobic; dichromate stress sample3
-0.4
+0.4
+0.0
-0.4
-0.4
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
-0.7
+0.1
+0.2
-0.6
+0.1
nitrogen source
L-Citrulline (N)
+0.1
-0.3
-0.2
-0.7
+0.2
nitrogen source
nitrite (N)
-0.5
+0.0
+0.1
+0.5
-0.6
temperature
LB 30C timecourse2 timepoint 1
+0.2
+0.3
-0.1
-0.5
-0.4
stress
Zinc 0.12 mM
-0.2
-0.1
-0.2
+0.6
-0.5
stress
Spectinomycin 0.00625 mg/ml
-0.4
+0.0
-0.5
+0.4
+0.1
stress
Paraquat dichloride 0.015 mg/ml
-0.4
+0.6
-0.2
-0.6
+0.2
stress
Def Chlorate 20 mM
+0.5
-0.3
-0.3
-0.1
-0.2
carbon source
L-tyrosine (C)
-0.2
-0.7
+0.4
+0.1
+0.1
stress
5-Hydroxymethylfurfural 5 mM
+0.2
-0.2
-0.6
+0.7
-0.2
RCH2 grown on a colony of N2F3
+0.4
+0.3
+0.1
-0.9
-0.0
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.5
+0.4
+0.3
-0.3
+0.1
stress
Vancomycin 0.016 mg/ml
-0.3
-0.1
-0.3
+0.5
+0.4
nitrogen source
L-Isoleucine (N)
+0.2
-0.2
+0.5
+0.1
-0.4
RCH2 grown on a colony of Serratia
-0.0
+0.3
-0.6
+0.8
+0.0
stress
nitrate 200 mM
-0.4
+0.2
+0.0
+0.8
+0.2
RCH2 grown on a colony of ecoli
-0.2
+0.0
-0.3
+0.6
+0.7
carbon source
propionate (C)
-0.9
+0.7
-0.3
+1.1
+0.4
RCH2 grown on a colony of Serratia
-0.2
+0.4
+0.4
+0.4
+0.1
stress
nitrate 200 mM
-0.3
+0.6
+0.4
+0.7
+0.0
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