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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3775 and Psest_3776 are separated by 130 nucleotides
Psest_3776 and Psest_3777 are separated by 38 nucleotides
Psest_3777 and Psest_3778 are separated by 224 nucleotides
Psest_3778 and Psest_3779 are separated by 97 nucleotides
Psest_3775: Psest_3775 - Mg chelatase-related protein, at 3,941,122 to 3,942,618
_3775
Psest_3776: Psest_3776 - choline/carnitine/betaine transport, at 3,942,749 to 3,944,722
_3776
Psest_3777: Psest_3777 - diguanylate cyclase (GGDEF) domain, at 3,944,761 to 3,946,419
_3777
Psest_3778: Psest_3778 - ATP-dependent DNA helicase Rep, at 3,946,644 to 3,948,653
_3778
Psest_3779: Psest_3779 - channel protein, hemolysin III family, at 3,948,751 to 3,949,368
_3779
Group
Condition
Psest
_3775
Psest
_3776
Psest
_3777
Psest
_3778
Psest
_3779
stress
nitrate 200 mM
+0.1
-0.6
-3.1
N.D.
-0.0
stress
nitrate 250 mM
+0.9
-1.0
-2.4
N.D.
-0.4
carbon source
L-tyrosine (C)
+0.7
-0.3
-2.6
N.D.
-0.6
stress
Chloride 200 mM
+0.1
-0.3
-2.3
N.D.
-0.2
stress
Doxycycline hyclate 0.0002 mg/ml
-0.5
-0.3
-1.3
N.D.
-0.4
stress
Def Fusidic 0.032 mg/ml
+0.0
-0.2
-2.0
N.D.
-0.3
stress
Polymyxin B sulfate 0.0001 mg/ml
-1.4
+0.0
-1.1
N.D.
-0.0
stress
Chloride 200 mM
+0.0
-0.7
-1.7
N.D.
+0.0
stress
Def Benzalkonium Chloride 0.002 mg/ml
+0.8
-0.1
-2.3
N.D.
-0.6
stress
methylglyoxal 0.0016 vol%
-0.8
-0.3
-0.6
N.D.
-0.6
carbon source
L-tyrosine (C)
+0.5
-0.0
-2.0
N.D.
-0.5
stress
Def Carbenicillin 0.02 mg/ml
+0.5
+0.2
-2.4
N.D.
+0.2
stress
A22 0.002 mg/ml
+0.2
+0.2
-1.8
N.D.
-0.0
nitrogen source
L-Isoleucine (N)
+0.3
+0.1
-2.1
N.D.
+0.3
stress
Dimethyl Sulfoxide 5 vol%
+0.7
-0.2
-1.5
N.D.
-0.1
stress
Neomycin 0.004 mg/ml
+0.5
-0.2
-1.4
N.D.
-0.1
nitrogen source
nitrate (N)
+0.7
-0.1
-1.4
N.D.
-0.2
nitrogen source
Glycine (N)
+0.6
-0.3
-1.4
N.D.
+0.2
nitrogen source
nitrite (N)
+0.7
-0.2
-1.5
N.D.
+0.2
stress
Gentamicin 0.0016 mg/ml
+0.8
-0.1
-1.5
N.D.
+0.3
stress
Def Carbenicillin 0.008 mg/ml
+1.0
-0.5
-0.6
N.D.
+0.1
stress
Def 2-Furfuraldehyde 0.032 vol%
+1.4
+0.0
-1.8
N.D.
+0.3
nitrogen source
nitrite (N)
+1.1
-0.3
-0.8
N.D.
-0.1
stress
Fusidic 0.016 mg/ml
+1.1
-0.0
-1.2
N.D.
+0.2
carbon source
butyrate (C)
+1.2
-0.2
-0.5
N.D.
-0.3
stress
2-Furfuraldehyde 0.05 vol%
+0.1
-0.4
+1.2
N.D.
-0.4
stress
Cephalothin 0.04 mg/ml
+1.3
+0.1
-0.8
N.D.
-0.1
stress
Choline chloride 90 mM
-1.2
+2.1
+0.3
N.D.
-0.2
stress
L-Lysine 200 mM
+0.1
+1.7
-0.5
N.D.
+0.0
stress
Choline chloride 90 mM
-0.1
+2.5
+0.7
N.D.
+0.3
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