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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3773 and Psest_3774 are separated by 396 nucleotides
Psest_3774 and Psest_3775 are separated by 36 nucleotides
Psest_3775 and Psest_3776 are separated by 130 nucleotides
Psest_3776 and Psest_3777 are separated by 38 nucleotides
Psest_3773: Psest_3773 - Nitrogen regulatory protein PII, at 3,940,090 to 3,940,428
_3773
Psest_3774: Psest_3774 - Uncharacterized protein conserved in bacteria, at 3,940,825 to 3,941,085
_3774
Psest_3775: Psest_3775 - Mg chelatase-related protein, at 3,941,122 to 3,942,618
_3775
Psest_3776: Psest_3776 - choline/carnitine/betaine transport, at 3,942,749 to 3,944,722
_3776
Psest_3777: Psest_3777 - diguanylate cyclase (GGDEF) domain, at 3,944,761 to 3,946,419
_3777
Group
Condition
Psest
_3773
Psest
_3774
Psest
_3775
Psest
_3776
Psest
_3777
stress
nitrate 200 mM
N.D.
N.D.
+0.1
-0.6
-3.1
stress
nitrate 250 mM
N.D.
N.D.
+0.9
-1.0
-2.4
stress
Chloride 200 mM
N.D.
N.D.
+0.1
-0.3
-2.3
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
N.D.
-1.4
+0.0
-1.1
stress
Chloride 200 mM
N.D.
N.D.
+0.0
-0.7
-1.7
carbon source
L-tyrosine (C)
N.D.
N.D.
+0.7
-0.3
-2.6
stress
Def Fusidic 0.032 mg/ml
N.D.
N.D.
+0.0
-0.2
-2.0
stress
Doxycycline hyclate 0.0002 mg/ml
N.D.
N.D.
-0.5
-0.3
-1.3
stress
sodium fluoride 6.25 mM
N.D.
N.D.
-0.4
-0.5
-1.0
stress
Def Carbenicillin 0.02 mg/ml
N.D.
N.D.
+0.5
+0.2
-2.4
nitrogen source
L-Isoleucine (N)
N.D.
N.D.
+0.3
+0.1
-2.1
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
N.D.
+0.8
-0.1
-2.3
carbon source
L-tyrosine (C)
N.D.
N.D.
+0.5
-0.0
-2.0
stress
A22 0.002 mg/ml
N.D.
N.D.
+0.2
+0.2
-1.8
nitrogen source
Glycine (N)
N.D.
N.D.
+0.6
-0.3
-1.4
stress
Dimethyl Sulfoxide 5 vol%
N.D.
N.D.
+0.7
-0.2
-1.5
nitrogen source
nitrite (N)
N.D.
N.D.
+0.7
-0.2
-1.5
stress
Neomycin 0.004 mg/ml
N.D.
N.D.
+0.5
-0.2
-1.4
nitrogen source
nitrate (N)
N.D.
N.D.
+0.7
-0.1
-1.4
stress
Gentamicin 0.0016 mg/ml
N.D.
N.D.
+0.8
-0.1
-1.5
stress
Def 2-Furfuraldehyde 0.032 vol%
N.D.
N.D.
+1.4
+0.0
-1.8
stress
Def Carbenicillin 0.008 mg/ml
N.D.
N.D.
+1.0
-0.5
-0.6
stress
Fusidic 0.016 mg/ml
N.D.
N.D.
+1.1
-0.0
-1.2
nitrogen source
nitrite (N)
N.D.
N.D.
+1.1
-0.3
-0.8
stress
Cephalothin 0.04 mg/ml
N.D.
N.D.
+1.3
+0.1
-0.8
stress
Carbenicillin 0.008 mg/ml
N.D.
N.D.
-0.5
+0.0
+1.5
stress
Choline chloride 90 mM
N.D.
N.D.
-1.2
+2.1
+0.3
stress
L-Lysine 200 mM
N.D.
N.D.
+0.1
+1.7
-0.5
RCH2 grown on a colony of N2F3
N.D.
N.D.
+0.4
+0.5
+1.0
stress
Choline chloride 90 mM
N.D.
N.D.
-0.1
+2.5
+0.7
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