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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3766 and Psest_3767 are separated by 66 nucleotides
Psest_3767 and Psest_3768 overlap by 4 nucleotides
Psest_3768 and Psest_3769 are separated by 67 nucleotides
Psest_3769 and Psest_3770 are separated by 78 nucleotides
Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700
_3766
Psest_3767: Psest_3767 - tyrosine recombinase XerC, at 3,934,767 to 3,935,666
_3767
Psest_3768: Psest_3768 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E, at 3,935,663 to 3,936,364
_3768
Psest_3769: Psest_3769 - hypothetical protein, at 3,936,432 to 3,936,761
_3769
Psest_3770: Psest_3770 - secondary thiamine-phosphate synthase enzyme, at 3,936,840 to 3,937,265
_3770
Group
Condition
Psest
_3766
Psest
_3767
Psest
_3768
Psest
_3769
Psest
_3770
stress
Polymyxin B sulfate 0.0001 mg/ml
-2.4
-2.3
-1.2
N.D.
-1.0
carbon source
L-Lactate (C)
-4.3
-1.4
-0.1
N.D.
-0.2
stress
Choline chloride 90 mM
-2.6
-1.3
-1.3
N.D.
-0.7
stress
Def Cisplatin 0.0002 mg/ml
-2.9
-2.9
-0.1
N.D.
+0.2
stress
Def Nalidixic 0.0005 mg/ml
-2.5
-2.5
-0.3
N.D.
-0.0
stress
Paraquat dichloride 0.015 mg/ml
-1.5
-2.8
-1.3
N.D.
+0.3
temperature
LB 30C timecourse2 timepoint 2
-3.1
-1.0
-0.3
N.D.
-0.6
stress
Paraquat dichloride 0.015 mg/ml
-2.1
-1.5
-1.7
N.D.
+0.3
stress
Def methylglyoxal 0.01 vol%
-2.0
-2.7
-0.1
N.D.
+0.0
stress
Benzethonium chloride 0.0125 mM
-2.0
-1.6
-0.8
N.D.
-0.4
stress
Nalidixic 0.001 mg/ml
-2.4
-3.2
+0.6
N.D.
+0.3
stress
sodium fluoride 6.25 mM
-1.6
-2.1
-0.4
N.D.
-0.5
stress
Def Nalidixic 0.001 mg/ml
-2.1
-2.6
-0.1
N.D.
+0.4
stress
Chloride 200 mM
-1.5
-2.0
-1.3
N.D.
+0.4
anaerobic
Nitrite/ lactate media with Nitrite 20mM
-1.7
-2.1
-0.4
N.D.
-0.2
stress
nitrate 200 mM
-1.9
-2.1
-0.6
N.D.
+0.1
nitrogen source
nitrite (N)
-2.2
-1.5
-0.4
N.D.
-0.3
nitrogen source
L-Glutamine (N)
-3.4
-1.1
+0.2
N.D.
+0.0
lb
LB
-2.7
-2.2
+0.7
N.D.
-0.1
stress
nitrate 200 mM
-1.4
-2.5
-0.8
N.D.
+0.6
stress
nitrate 250 mM
-0.4
-1.9
-2.3
N.D.
+0.7
stress
Nalidixic 0.00390625 mg/ml
-1.8
-2.4
+0.5
N.D.
+0.1
stress
Cisplatin 0.003 mg/ml
-1.2
-2.6
+0.5
N.D.
-0.2
stress
D-Cycloserine 0.032 mg/ml
-1.2
-2.2
-0.2
N.D.
+0.9
stress
Bacitracin 0.25 mg/ml
-1.9
-1.1
+1.8
N.D.
+0.2
stress
Cephalothin 0.04 mg/ml
-1.7
-1.1
+1.4
N.D.
+0.7
stress
Gentamicin 0.0016 mg/ml
+1.3
-2.4
+0.2
N.D.
+0.4
stress
A22 0.005 mg/ml
+3.2
-1.5
+0.1
N.D.
+0.4
stress
A22 0.002 mg/ml
+3.4
-0.8
-0.1
N.D.
+0.6
stress
A22 0.005 mg/ml
+5.0
-0.8
-0.1
N.D.
-0.1
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