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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3739 and Psest_3740 overlap by 4 nucleotides
Psest_3740 and Psest_3741 are separated by 68 nucleotides
Psest_3741 and Psest_3742 overlap by 25 nucleotides
Psest_3742 and Psest_3743 are separated by 104 nucleotides
Psest_3739: Psest_3739 - Small-conductance mechanosensitive channel, at 3,910,405 to 3,910,986
_3739
Psest_3740: Psest_3740 - ATPase components of ABC transporters with duplicated ATPase domains, at 3,910,983 to 3,912,893
_3740
Psest_3741: Psest_3741 - TIGR02444 family protein, at 3,912,962 to 3,913,438
_3741
Psest_3742: Psest_3742 - hypothetical protein, at 3,913,414 to 3,914,244
_3742
Psest_3743: Psest_3743 - Regulator of sigma D, at 3,914,349 to 3,914,816
_3743
Group
Condition
Psest
_3739
Psest
_3740
Psest
_3741
Psest
_3742
Psest
_3743
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.7
-0.9
N.D.
-0.4
-0.3
stress
Cephalothin 0.04 mg/ml
-1.1
+0.0
N.D.
+0.1
-1.3
stress
Lactate-nitrate; anaerobic; copper stress sample1
-0.5
-0.5
N.D.
-0.6
-0.5
stress
Def Benzalkonium Chloride 0.002 mg/ml
-1.4
+0.0
N.D.
+0.2
-0.9
stress
sodium fluoride 6.25 mM
-0.9
-0.5
N.D.
-0.4
-0.2
stress
Gentamicin 0.0016 mg/ml
-0.2
-0.2
N.D.
-0.6
-0.9
stress
Choline chloride 90 mM
-0.5
-0.8
N.D.
-0.4
-0.2
stress
Choline Lysine 20 mM
-0.2
-0.4
N.D.
-0.6
-0.6
radiation
Ionizing radiation, 319.06 Gy,
-0.6
-0.2
N.D.
-0.7
-0.4
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.9
+0.2
N.D.
-0.8
-0.2
nitrogen source
L-Isoleucine (N)
-0.5
-0.3
N.D.
-0.5
-0.5
stress
Paraquat dichloride 0.015 mg/ml
-0.3
-0.2
N.D.
-0.7
-0.5
stress
Choline chloride 90 mM
+0.4
-0.6
N.D.
-0.7
-0.4
nitrogen source
L-Valine (N)
+0.2
+0.0
N.D.
-0.5
-0.9
stress
syringaldehyde 3 mM
+0.3
-0.4
N.D.
-0.8
-0.2
stress
Lactate-nitrate; anaerobic; copper stress sample2
+0.4
-0.3
N.D.
-0.7
-0.3
RCH2 grown on a colony of Serratia
-0.6
-0.4
N.D.
+0.8
-0.1
nitrogen source
nitrite (N)
-0.2
-0.2
N.D.
-0.5
+0.8
carbon source
L-Alanine (C)
-0.7
-0.1
N.D.
+0.5
+0.4
nitrogen source
L-Glutamic (N)
+0.5
+0.5
N.D.
-0.4
-0.4
RCH2 grown on a colony of ecoli
+1.1
-0.2
N.D.
-0.1
-0.6
stress
L-Lysine 200 mM
-0.3
-0.1
N.D.
+0.2
+1.2
carbon source
D-Fructose (C)
+0.3
-0.4
N.D.
+0.7
+0.7
RCH2 grown on a colony of N2C3
+0.2
+0.1
N.D.
+0.4
+0.9
stress
perchlorate 25 mM
+0.6
+0.4
N.D.
+0.2
+0.5
RCH2 grown on a colony of N2A2
+0.3
+0.4
N.D.
+0.2
+0.8
carbon source
propionate (C)
+0.3
+0.2
N.D.
+0.7
+0.7
RCH2 grown on a colony of N2F3
+0.7
+0.3
N.D.
+0.5
+0.6
stress
Def Carbenicillin 0.02 mg/ml
+0.8
+0.5
N.D.
-0.0
+1.0
stress
Furfuryl Alcohol 0.05 vol%
+0.9
+0.8
N.D.
+0.3
+0.9
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