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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3735 and Psest_3736 are separated by 4 nucleotides
Psest_3736 and Psest_3737 are separated by 14 nucleotides
Psest_3737 and Psest_3739 are separated by 312 nucleotides
Psest_3739 and Psest_3740 overlap by 4 nucleotides
Psest_3735: Psest_3735 - uncharacterized domain 1, at 3,908,518 to 3,908,985
_3735
Psest_3736: Psest_3736 - Uncharacterized protein conserved in bacteria, at 3,908,990 to 3,909,445
_3736
Psest_3737: Psest_3737 - Putative threonine efflux protein, at 3,909,460 to 3,910,092
_3737
Psest_3739: Psest_3739 - Small-conductance mechanosensitive channel, at 3,910,405 to 3,910,986
_3739
Psest_3740: Psest_3740 - ATPase components of ABC transporters with duplicated ATPase domains, at 3,910,983 to 3,912,893
_3740
Group
Condition
Psest
_3735
Psest
_3736
Psest
_3737
Psest
_3739
Psest
_3740
stress
Choline Lysine 20 mM
-1.4
-0.2
+0.1
-0.4
-0.4
nutrient
Min media with glucose
-1.7
-0.3
+0.3
-0.4
-0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.0
-0.7
+0.3
-0.9
+0.2
carbon source
L-tyrosine (C)
-2.0
-0.3
+0.3
+0.3
-0.3
nutrient
L-tyrosine
-1.7
-0.0
+0.2
-0.6
+0.1
nutrient
Min media with glucose
-0.7
-1.2
+0.1
-0.4
+0.2
stress
2-Furfuraldehyde 0.05 vol%
-0.9
-1.0
-0.3
+0.5
-0.2
stress
syringaldehyde 4 mM
-1.3
-0.5
+0.5
-0.3
-0.1
stress
Nickel (II) chloride 1 mM
-0.9
-1.1
+0.2
+0.2
-0.1
stress
nitrate 250 mM
-0.5
+0.2
+0.3
-1.3
-0.1
stress
Lactate-nitrate; anaerobic; copper stress sample1
+0.8
-1.1
+0.1
-0.5
-0.5
stress
Chlorate 75 mM
-0.4
+0.6
-0.5
-0.5
-0.4
stress
Paraquat dichloride 0.015 mg/ml
-1.5
+0.8
+0.4
-0.5
-0.2
stress
Zinc 0.12 mM
-1.0
+0.7
-0.1
-0.3
-0.3
nitrogen source
L-Isoleucine (N)
-1.6
+0.5
-0.1
+0.3
+0.1
stress
Lactate-nitrate; anaerobic; nickel stress sample3
+0.9
-0.7
-0.5
-0.2
-0.2
RCH2 grown on a colony of N2F3
-1.6
-0.1
+0.1
+0.7
+0.3
stress
benzoic 0.4 mg/ml
-1.1
-0.3
+0.4
+0.6
-0.2
vitamin
With vitamins t2
-1.0
+0.3
+0.5
+0.2
-0.4
stress
Choline chloride 90 mM
+1.2
+0.1
-0.1
-0.5
-0.8
nutrient
L-tyrosine
+0.9
-0.8
+0.6
-0.7
-0.0
stress
Def Cephalothin 0.08 mg/ml
+1.3
-0.2
-0.5
-0.4
-0.2
nitrogen source
L-Glutamic (N)
-1.0
+0.3
+0.0
+0.5
+0.5
RCH2 grown on a colony of ecoli
+0.2
-0.6
+0.3
+1.1
-0.2
stress
Lactate-nitrate; anaerobic; cadmium stress sample1
+1.6
-0.4
-0.1
-0.2
-0.2
anaerobic
Nitrite/ lactate media with Nitrite 20mM
+1.3
-0.6
-0.1
+0.2
+0.1
nitrogen source
L-Glutamic (N)
+0.7
+0.9
-0.4
+0.1
-0.2
stress
nitrate 200 mM
+0.9
+0.6
+0.6
-0.2
-0.3
stress
Furfuryl Alcohol 0.05 vol%
+0.3
-0.4
+0.3
+0.9
+0.8
RCH2 grown on a colony of Pseudomonas migulae strain N1B4
+2.6
+0.3
-0.3
+0.1
-0.4
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