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Protein
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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3693 and Psest_3694 overlap by 4 nucleotides
Psest_3694 and Psest_3695 overlap by 8 nucleotides
Psest_3695 and Psest_3696 overlap by 8 nucleotides
Psest_3696 and Psest_3697 overlap by 4 nucleotides
Psest_3693: Psest_3693 - Glycosyltransferases involved in cell wall biogenesis, at 3,856,987 to 3,857,802
_3693
Psest_3694: Psest_3694 - Predicted acyltransferase, at 3,857,799 to 3,858,743
_3694
Psest_3695: Psest_3695 - Histidine ammonia-lyase, at 3,858,736 to 3,860,268
_3695
Psest_3696: Psest_3696 - Predicted thioesterase, at 3,860,261 to 3,860,686
_3696
Psest_3697: Psest_3697 - Outer membrane lipoprotein carrier protein LolA., at 3,860,683 to 3,861,294
_3697
Group
Condition
Psest
_3693
Psest
_3694
Psest
_3695
Psest
_3696
Psest
_3697
stress
Carbenicillin 0.008 mg/ml
-0.7
-0.4
-0.3
-0.2
-2.2
nutrient
Min media with glucose
-1.5
-0.0
-0.2
-0.1
-1.6
stress
Vanillin 2 mM
-0.8
+0.0
-0.4
-0.0
-2.0
nitrogen source
Cytosine (N)
-0.7
-0.1
-0.3
-0.6
-1.2
stress
Def A22 0.015 mg/ml
+0.2
-0.4
-0.3
-0.5
-1.8
temperature
LB 30C timecourse2 timepoint 1
-2.1
+0.0
+0.3
-0.1
-0.7
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.5
+0.1
-0.1
+0.4
-2.4
stress
Nickel (II) chloride 0.8 mM
+0.2
-0.2
+0.1
+0.0
-2.7
stress
Vanillin 2 mM
-1.9
+0.2
+0.0
+0.2
-0.9
stress
Cobalt chloride 0.05 mM
+0.3
-0.1
-0.1
-0.1
-2.2
stress
Def Dimethyl Sulfoxide 5 vol%
-0.6
-0.3
+0.2
+0.2
-1.6
stress
Def Carbenicillin 0.02 mg/ml
-1.9
-0.9
+0.3
-0.3
+0.9
stress
Gentamicin 0.0016 mg/ml
+0.9
+0.6
-0.1
+0.2
-3.3
RCH2 grown on a colony of Serratia
-1.3
+0.6
-0.3
+0.3
-0.9
carbon source
propionate (C)
+0.7
+0.5
-0.3
-0.3
-1.4
stress
Def Neomycin 0.0008 mg/ml
-2.4
+0.5
+0.2
+0.8
+0.7
stress
Def Fusidic 0.064 mg/ml
+0.8
+0.5
+0.1
+0.4
-1.9
RCH2 grown on a colony of N2A2
-1.7
+0.1
-0.0
+0.4
+1.4
stress
Def Chlorate 40 mM
-1.0
+0.1
+0.0
+0.5
+1.4
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.9
+0.9
+0.5
+0.2
-0.8
stress
Def Chlorate 20 mM
-0.9
+0.4
+0.1
+0.9
+1.7
stress
Chlorite 0.06 mM
-0.4
+0.2
+0.3
-0.1
+2.4
stress
Def Thallium(I) acetate 0.125 mg/ml
+0.1
-0.1
+0.2
+0.6
+1.8
anaerobic
nitrate reduction - anaerobic
+0.1
+0.8
+0.4
+0.5
+1.6
stress
Def Polymyxin B sulfate 0.0001 mg/ml
-0.2
+0.8
+0.5
+0.6
+1.7
stress
nitrate 250 mM
+0.6
+0.6
+0.6
+0.7
+1.2
stress
Def Nalidixic 0.001 mg/ml
+1.1
+0.8
+0.4
+0.6
+1.4
stress
Def Polymyxin B sulfate 0.00008 mg/ml
+0.9
+0.9
+0.7
+0.5
+1.6
stress
Fusidic 0.016 mg/ml
+1.0
+0.8
+0.6
+0.7
+1.4
stress
Def Benzalkonium Chloride 0.002 mg/ml
+1.3
+1.4
+0.7
+0.5
+0.9
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