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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0361 and Psest_0362 overlap by 1 nucleotides
Psest_0362 and Psest_0363 are separated by 58 nucleotides
Psest_0363 and Psest_0364 are separated by 78 nucleotides
Psest_0364 and Psest_0365 are separated by 41 nucleotides
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Psest_0364: Psest_0364 - Gluconolactonase, at 390,412 to 391,302
_0364
Psest_0365: Psest_0365 - NAD dependent epimerase/dehydratase family., at 391,344 to 392,159
_0365
Group
Condition
Psest
_0361
Psest
_0362
Psest
_0363
Psest
_0364
Psest
_0365
stress
Def A22 0.015 mg/ml
-0.6
-1.0
-0.5
-0.5
-0.5
stress
Def Carbenicillin 0.008 mg/ml
-0.5
-0.4
-0.0
-0.6
-0.7
stress
5-Hydroxymethylfurfural 5 mM
-0.2
-0.5
-0.3
-0.7
-0.3
nitrogen source
nitrite (N)
-0.3
-0.0
-0.4
-0.2
-0.9
stress
Nalidixic 0.00390625 mg/ml
-0.8
-0.3
+0.1
-0.5
-0.3
nitrogen source
L-Alanine (N)
-0.4
-0.3
-0.5
-0.1
-0.4
RCH2 grown on a colony of N2F3
+0.1
-0.2
-0.9
-0.1
-0.3
stress
Def Dimethyl Sulfoxide 5 vol%
-0.2
-0.5
-1.0
+0.2
+0.2
stress
L-Lysine 200 mM
-0.4
+0.5
-0.7
-0.3
-0.2
stress
Furfuryl Alcohol 0.05 vol%
+0.1
-1.0
+0.2
-0.4
+0.1
stress
Thallium(I) acetate 0.09 mg/ml
-0.4
+0.1
+0.3
-0.5
-0.4
stress
L-Lysine 200 mM
+0.2
+0.1
-0.9
-0.4
+0.1
carbon source
L-tyrosine (C)
+0.1
+0.2
-0.4
+0.3
-0.7
stress
Choline Lysine 20 mM
+0.2
+0.4
-0.7
-0.6
+0.3
stress
Def Carbenicillin 0.02 mg/ml
-0.5
+0.1
-0.7
+0.3
+0.4
stress
Doxycycline hyclate 0.0002 mg/ml
+0.1
-0.5
+0.7
-0.7
+0.1
stress
Nickel (II) chloride 0.9 mM
-0.5
+0.3
+0.3
-0.3
+0.3
carbon source
Glucose defined media
-0.0
-0.3
+0.5
-0.5
+0.3
stress
D-Cycloserine 0.032 mg/ml
+0.2
-0.6
+0.7
-0.0
-0.2
RCH2 grown on a colony of Serratia
-0.4
-0.2
+0.4
+1.1
-0.7
temperature
LB 30C timecourse1 timepoint 1
-0.2
-0.4
+0.8
-0.1
+0.2
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.0
-0.7
+0.6
-0.1
+0.6
carbon source
D-Gluconic Acid (C)
+0.2
-0.8
+0.2
+0.3
+0.4
stress
Nickel (II) chloride 0.8 mM
-0.1
+0.6
-0.5
+0.1
+0.4
RCH2 grown on a colony of 8R2A
+0.1
-0.6
+0.8
+0.3
+0.3
stress
A22 0.005 mg/ml
+0.1
+0.6
+0.6
-0.2
-0.1
stress
A22 0.002 mg/ml
-0.3
+0.6
+0.7
+0.3
+0.1
stress
D-Cycloserine 0.032 mg/ml
+0.4
-0.1
+0.9
+0.3
+0.2
nitrogen source
L-Glutamic (N)
+0.3
+0.6
+0.2
+0.1
+0.5
nitrogen source
L-Isoleucine (N)
+0.4
+0.3
+0.6
+0.2
+0.3
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