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Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
Psest_0359 and Psest_0360 are separated by 57 nucleotides
Psest_0360 and Psest_0361 are separated by 223 nucleotides
Psest_0361 and Psest_0362 overlap by 1 nucleotides
Psest_0362 and Psest_0363 are separated by 58 nucleotides
Psest_0359: Psest_0359 - Transcriptional regulators, at 385,560 to 386,312
_0359
Psest_0360: Psest_0360 - Predicted permease, DMT superfamily, at 386,370 to 387,272
_0360
Psest_0361: Psest_0361 - TRAP transporter, DctM subunit, at 387,496 to 388,776
_0361
Psest_0362: Psest_0362 - TRAP-type C4-dicarboxylate transport system, small permease component, at 388,776 to 389,303
_0362
Psest_0363: Psest_0363 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 389,362 to 390,333
_0363
Group
Condition
Psest
_0359
Psest
_0360
Psest
_0361
Psest
_0362
Psest
_0363
stress
Def Cephalothin 0.08 mg/ml
-4.6
-0.3
-0.6
-0.2
-0.1
carbon source
D-Fructose (C)
-4.7
-0.2
-0.2
-0.1
+0.1
carbon source
L-tyrosine (C)
-4.5
-0.4
+0.1
+0.2
-0.4
carbon source
L-tyrosine (C)
-4.4
-0.6
-0.1
+0.2
+0.0
carbon source
D-Fructose (C)
-4.5
+0.1
+0.1
-0.0
+0.1
stress
Def A22 0.015 mg/ml
-1.2
-0.9
-0.6
-1.0
-0.5
stress
Def Fusidic 0.064 mg/ml
-3.0
-0.0
-0.2
-0.5
-0.2
stress
Def Carbenicillin 0.02 mg/ml
-1.7
-0.9
-0.5
+0.1
-0.7
nitrogen source
L-Alanine (N)
-1.5
-0.4
-0.4
-0.3
-0.5
stress
Def Dimethyl Sulfoxide 5 vol%
-1.4
+0.1
-0.2
-0.5
-1.0
metal limitation
Lactate-nitrite; anaerobic; sample3
-3.3
+0.1
+0.2
-0.0
+0.1
stress
Furfuryl Alcohol 0.05 vol%
-1.5
-0.8
+0.1
-1.0
+0.2
nitrogen source
nitrite (N)
-2.9
-0.2
-0.0
+0.2
+0.3
carbon source
L-Glutamic (C)
-2.5
+0.1
+0.1
-0.4
+0.2
stress
Def Carbenicillin 0.008 mg/ml
-2.0
+0.4
-0.5
-0.4
-0.0
stress
D-Cycloserine 0.032 mg/ml
-3.8
+0.3
+0.4
-0.1
+0.9
stress
Choline Lysine 20 mM
-2.0
-0.1
+0.2
+0.4
-0.7
stress
D-Cycloserine 0.032 mg/ml
-2.6
+0.0
+0.2
-0.6
+0.7
nitrogen source
nitrite (N)
-2.0
-0.2
+0.2
-0.6
+0.4
stress
Def Cephalothin 0.04 mg/ml
-2.5
+0.4
+0.2
-0.1
-0.1
carbon source
D-Alanine (C)
-1.7
+0.1
-0.1
-0.7
+0.4
stress
Benzalkonium Chloride 0.002 mg/ml
-3.3
+0.6
+0.4
+0.5
+0.1
stress
Paraquat dichloride 0.015 mg/ml
-2.0
-0.2
-0.1
+0.4
+0.2
stress
Def 2-Furfuraldehyde 0.032 vol%
-1.9
+0.3
-0.3
+0.4
+0.1
stress
Def Chloride 400 mM
-2.4
+0.6
+0.0
+0.5
-0.1
vitamin
No vitamins t2
-1.8
-0.3
-0.0
+0.0
+0.7
nitrogen source
Glycine (N)
-1.9
+0.4
+0.2
+0.3
-0.2
stress
nitrate 250 mM
-2.5
+1.2
+0.0
+0.3
+0.2
stress
nitrate 200 mM
-2.3
+0.6
-0.0
+0.9
+0.6
RCH2 grown on a colony of N2C3
+2.5
+0.4
-0.2
-0.2
-0.7
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