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Cofit
Protein
Homologs
Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_0351 and Psest_0352 are separated by 11 nucleotides
Psest_0352 and Psest_0353 are separated by 19 nucleotides
Psest_0353 and Psest_0354 are separated by 199 nucleotides
Psest_0354 and Psest_0355 are separated by 219 nucleotides
Psest_0351: Psest_0351 - hypothetical protein, at 375,615 to 376,019
_0351
Psest_0352: Psest_0352 - hypothetical protein, at 376,031 to 377,200
_0352
Psest_0353: Psest_0353 - Methyl-accepting chemotaxis protein, at 377,220 to 378,842
_0353
Psest_0354: Psest_0354 - Malate synthase G (EC 2.3.3.9)
(from data)
, at 379,042 to 381,222
_0354
Psest_0355: Psest_0355 - Glycine cleavage system regulatory protein, at 381,442 to 381,966
_0355
Group
Condition
Psest
_0351
Psest
_0352
Psest
_0353
Psest
_0354
Psest
_0355
stress
Chlorate 75 mM
-0.6
-0.3
-0.7
+0.1
-2.0
carbon source
propionate (C)
+0.1
+0.0
+0.3
-0.2
-3.6
stress
Choline chloride 90 mM
-0.1
-0.0
-0.9
+0.0
-2.0
radiation
Ionizing radiation, 319.06 Gy,
+0.1
-0.1
-0.2
-0.0
-2.1
nitrogen source
L-Glutamine (N)
+0.1
-0.1
-0.3
+0.0
-1.8
carbon source
L-Leucine (C)
+0.2
+0.1
+0.1
-2.1
-0.1
carbon source
L-Leucine (C)
-0.2
+0.0
+0.3
-2.1
+0.1
stress
Def Carbenicillin 0.02 mg/ml
+0.2
-0.1
-0.7
+0.2
-1.6
carbon source
acetate (C)
-0.0
-0.1
-0.1
-2.0
+0.5
carbon source
L-tyrosine (C)
+0.2
-0.0
+1.0
+0.8
-3.6
stress
Furfuryl Alcohol 0.05 vol%
-0.3
-0.2
+0.5
-1.0
-0.5
stress
Polymyxin B sulfate 0.0001 mg/ml
-0.1
+0.2
+0.3
+0.2
-1.8
carbon source
Tween 20 (C)
-0.1
-0.0
+0.1
-1.8
+0.6
stress
Def 2-Furfuraldehyde 0.032 vol%
+0.7
-0.2
-0.3
+0.5
-1.7
carbon source
butyrate (C)
+0.4
+0.1
+0.2
-1.0
-0.7
carbon source
L-tyrosine (C)
-0.0
-0.1
+0.8
+1.0
-2.4
carbon source
butyrate (C)
+0.9
+0.1
+0.2
-1.2
-0.5
stress
Nickel (II) chloride 0.9 mM
+0.4
-0.0
+0.6
+0.1
-1.5
nitrogen source
nitrite (N)
+1.1
+0.0
+0.0
+0.3
-1.1
nitrogen source
L-Isoleucine (N)
+0.8
+0.2
+0.5
+0.5
-1.1
RCH2 grown on a colony of N2F3
+0.3
+0.1
-0.7
-0.1
+1.4
anaerobic
Nitrate/ lactate media with Nitrate 50mM
-0.4
+0.0
+0.2
-0.3
+1.7
carbon source
propionate (C)
-0.1
+0.1
+1.3
+0.5
-0.5
RCH2 grown on a colony of Serratia
+0.4
+0.1
-0.3
-0.2
+1.5
stress
nitrate 200 mM
+0.4
-0.1
-1.0
+0.2
+2.0
stress
Def Carbenicillin 0.008 mg/ml
+1.2
-0.0
-0.4
+0.5
+0.7
stress
Benzethonium chloride 0.0125 mM
+0.5
+0.1
-0.7
-0.1
+2.3
stress
Def Benzethonium chloride 0.008 mM
+0.8
+0.2
-0.5
+0.5
+1.3
stress
Cephalothin 0.04 mg/ml
+1.5
+0.3
+0.2
+0.8
-0.2
nitrogen source
nitrite (N)
+1.3
+0.1
+0.4
+0.7
+0.5
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