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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3576 and Psest_3577 are separated by 97 nucleotides
Psest_3577 and Psest_3578 are separated by 69 nucleotides
Psest_3578 and Psest_3579 are separated by 194 nucleotides
Psest_3579 and Psest_3580 are separated by 45 nucleotides
Psest_3576: Psest_3576 - excinuclease ABC, A subunit, at 3,750,195 to 3,753,038
_3576
Psest_3577: Psest_3577 - Predicted carboxypeptidase, at 3,753,136 to 3,754,401
_3577
Psest_3578: Psest_3578 - Catalase, at 3,754,471 to 3,755,931
_3578
Psest_3579: Psest_3579 - ribosomal protein L17, at 3,756,126 to 3,756,512
_3579
Psest_3580: Psest_3580 - DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type, at 3,756,558 to 3,757,559
_3580
Group
Condition
Psest
_3576
Psest
_3577
Psest
_3578
Psest
_3579
Psest
_3580
stress
Def Cisplatin 0.0002 mg/ml
-4.7
+0.0
+0.1
N.D.
N.D.
stress
Cisplatin 0.003 mg/ml
-4.2
+0.0
-0.2
N.D.
N.D.
stress
Furfuryl Alcohol 0.05 vol%
-0.3
-0.5
-3.5
N.D.
N.D.
stress
methylglyoxal 0.0016 vol%
-2.1
-0.3
-1.8
N.D.
N.D.
stress
Cisplatin 0.003 mg/ml
-4.2
+0.1
-0.1
N.D.
N.D.
stress
nitrate 250 mM
-3.0
+0.4
-1.2
N.D.
N.D.
stress
Chlorate 75 mM
-1.3
-0.8
-1.2
N.D.
N.D.
stress
Cisplatin 0.0016 mg/ml
-3.2
+0.0
-0.1
N.D.
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.3
+0.0
-2.4
N.D.
N.D.
temperature
LB 30C timecourse1 timepoint 3
-1.1
-0.5
-1.0
N.D.
N.D.
stress
Cisplatin 0.0016 mg/ml
-2.5
+0.0
-0.0
N.D.
N.D.
radiation
Ionizing radiation, 319.06 Gy,
-2.3
-0.1
-0.1
N.D.
N.D.
stress
D-Cycloserine 0.032 mg/ml
-0.3
+0.0
-2.0
N.D.
N.D.
radiation
Ionizing radiation, 319.06 Gy,
-2.1
-0.0
-0.0
N.D.
N.D.
stress
nitrate 200 mM
-1.1
+0.1
-1.1
N.D.
N.D.
stress
Fusidic 0.016 mg/ml
-1.4
+0.2
-0.8
N.D.
N.D.
stress
nitrate 200 mM
-1.0
-0.0
-1.0
N.D.
N.D.
stress
Nickel (II) chloride 0.8 mM
-0.4
-0.1
-1.4
N.D.
N.D.
stress
Nalidixic 0.001 mg/ml
-0.9
-0.4
-0.6
N.D.
N.D.
stress
Def methylglyoxal 0.01 vol%
-1.5
+0.1
-0.2
N.D.
N.D.
stress
Gentamicin 0.0016 mg/ml
-1.0
+0.3
-0.9
N.D.
N.D.
temperature
LB 30C timecourse1 timepoint 2
-0.6
-0.2
-0.6
N.D.
N.D.
temperature
LB 30C timecourse2 timepoint 1
-0.6
-0.3
-0.5
N.D.
N.D.
stress
Cephalothin 0.04 mg/ml
-1.1
+0.5
-0.6
N.D.
N.D.
stress
Lactate-nitrate; anaerobic; dichromate stress sample2
-1.0
+0.1
-0.2
N.D.
N.D.
stress
Lactate-nitrate; anaerobic; dichromate stress sample1
-1.0
+0.1
-0.2
N.D.
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.3
+0.2
-0.9
N.D.
N.D.
stress
Benzalkonium Chloride 0.002 mg/ml
-0.5
+0.3
-0.8
N.D.
N.D.
stress
Paraquat dichloride 0.015 mg/ml
-0.2
+0.4
-1.1
N.D.
N.D.
stress
Def 2-Furfuraldehyde 0.032 vol%
-0.2
+0.8
+0.5
N.D.
N.D.
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