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Fitness for 5 genes in
Pseudomonas stutzeri RCH2
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500 nt
Psest_3572 and Psest_3573 overlap by 8 nucleotides
Psest_3573 and Psest_3574 are separated by 10 nucleotides
Psest_3574 and Psest_3575 are separated by 164 nucleotides
Psest_3575 and Psest_3576 are separated by 131 nucleotides
Psest_3572: Psest_3572 - Nucleoside-diphosphate-sugar epimerases, at 3,746,226 to 3,747,149
_3572
Psest_3573: Psest_3573 - dTDP-4-dehydrorhamnose reductase, at 3,747,142 to 3,748,026
_3573
Psest_3574: Psest_3574 - single stranded DNA-binding protein (ssb), at 3,748,037 to 3,748,531
_3574
Psest_3575: Psest_3575 - Arabinose efflux permease, at 3,748,696 to 3,750,063
_3575
Psest_3576: Psest_3576 - excinuclease ABC, A subunit, at 3,750,195 to 3,753,038
_3576
Group
Condition
Psest
_3572
Psest
_3573
Psest
_3574
Psest
_3575
Psest
_3576
stress
Def Cisplatin 0.0002 mg/ml
N.D.
-0.7
N.D.
-0.4
-4.7
stress
Cisplatin 0.003 mg/ml
N.D.
-0.0
N.D.
-1.0
-4.2
stress
Def methylglyoxal 0.01 vol%
N.D.
-2.3
N.D.
-0.5
-1.5
stress
Cisplatin 0.003 mg/ml
N.D.
+0.2
N.D.
-0.2
-4.2
stress
Choline Lysine 20 mM
N.D.
-2.9
N.D.
-0.7
-0.4
stress
Cisplatin 0.0016 mg/ml
N.D.
-0.0
N.D.
-0.7
-3.2
carbon source
D-Maltose (C)
N.D.
-2.7
N.D.
-0.5
-0.0
stress
nitrite 2.5 mM
N.D.
-0.3
N.D.
-2.9
+0.1
carbon source
D-Maltose (C)
N.D.
-2.7
N.D.
-0.3
-0.1
stress
Cisplatin 0.0016 mg/ml
N.D.
-0.2
N.D.
-0.3
-2.5
radiation
Ionizing radiation, 319.06 Gy,
N.D.
-0.6
N.D.
-0.2
-2.1
carbon source
D-Maltose (C)
N.D.
-2.6
N.D.
-0.2
+0.0
stress
Choline Lysine 20 mM
N.D.
-2.2
N.D.
-0.5
+0.1
stress
nitrate 250 mM
N.D.
+1.4
N.D.
-0.7
-3.0
stress
nitrite 2.5 mM
N.D.
+0.5
N.D.
-2.6
-0.1
radiation
Ionizing radiation, 319.06 Gy,
N.D.
-0.2
N.D.
+0.3
-2.3
stress
Chlorate 75 mM
N.D.
+1.3
N.D.
-1.3
-1.3
stress
Gentamicin 0.0016 mg/ml
N.D.
+1.4
N.D.
-1.0
-1.0
stress
methylglyoxal 0.0016 vol%
N.D.
+2.8
N.D.
-0.2
-2.1
stress
Cephalothin 0.04 mg/ml
N.D.
+1.8
N.D.
+0.2
-1.1
stress
Polymyxin B sulfate 0.0001 mg/ml
N.D.
+2.2
N.D.
-0.6
-0.5
stress
Fusidic 0.016 mg/ml
N.D.
+1.8
N.D.
+1.0
-1.4
stress
Bacitracin 0.25 mg/ml
N.D.
+1.1
N.D.
+1.3
-0.6
stress
Benzalkonium Chloride 0.002 mg/ml
N.D.
+2.6
N.D.
-0.2
-0.5
carbon source
propionate (C)
N.D.
+2.7
N.D.
+0.4
-0.3
stress
Chlorite 0.06 mM
N.D.
+1.9
N.D.
+1.6
-0.4
stress
Nalidixic 0.00390625 mg/ml
N.D.
+0.5
N.D.
+3.1
-0.3
carbon source
propionate (C)
N.D.
+4.1
N.D.
-0.5
-0.0
stress
Furfuryl Alcohol 0.05 vol%
N.D.
+4.5
N.D.
-0.3
-0.3
stress
Def Benzalkonium Chloride 0.002 mg/ml
N.D.
+2.8
N.D.
+1.7
+0.0
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